| Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma M Ceccarelli, FP Barthel, TM Malta, TS Sabedot, SR Salama, BA Murray, ... Cell 164 (3), 550-563, 2016 | 2004 | 2016 |
| Toil enables reproducible, open source, big biomedical data analyses J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ... Nature biotechnology 35 (4), 314-316, 2017 | 1012 | 2017 |
| Comprehensive pan-genomic characterization of adrenocortical carcinoma S Zheng, AD Cherniack, N Dewal, RA Moffitt, L Danilova, BA Murray, ... Cancer cell 29 (5), 723-736, 2016 | 640 | 2016 |
| Comprehensive molecular characterization of pheochromocytoma and paraganglioma L Fishbein, I Leshchiner, V Walter, L Danilova, AG Robertson, ... Cancer cell 31 (2), 181-193, 2017 | 629 | 2017 |
| Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction DK Wells, MM van Buuren, KK Dang, VM Hubbard-Lucey, KCF Sheehan, ... Cell 183 (3), 818-834. e13, 2020 | 337 | 2020 |
| Global absence and targeting of protective immune states in severe COVID-19 AJ Combes, T Courau, NF Kuhn, KH Hu, A Ray, WS Chen, NW Chew, ... Nature 591 (7848), 124-130, 2021 | 227 | 2021 |
| Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19 MGP van der Wijst, SE Vazquez, GC Hartoularos, P Bastard, T Grant, ... Science translational medicine 13 (612), eabh2624, 2021 | 171 | 2021 |
| Spatiotemporal co-dependency between macrophages and exhausted CD8+ T cells in cancer K Kersten, KH Hu, AJ Combes, B Samad, T Harwin, A Ray, AA Rao, E Cai, ... Cancer Cell, 2022 | 130 | 2022 |
| ZipSeq: Barcoding for Real-time Mapping of Single Cell Transcriptomes KH Hu, JP Eichorst, CS McGinnis, DM Patterson, ED Chow, K Kersten, ... Nature Methods, 833-843, 2020 | 110 | 2020 |
| The UCSC SARS-CoV-2 Genome Browser JD Fernandes, AS Hinrichs, H Clawson, JN Gonzalez, BT Lee, LR Nassar, ... Nature Genetics, 991-998, 2020 | 93 | 2020 |
| Discovering dominant tumor immune archetypes in a pan-cancer census AJ Combes, B Samad, J Tsui, NW Chew, P Yan, GC Reeder, D Kushnoor, ... Cell 185 (1), 184-203. e19, 2022 | 75 | 2022 |
| SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data S Pattnaik, S Gupta, AA Rao, B Panda BMC bioinformatics 15 (1), 1-9, 2014 | 75 | 2014 |
| Increased risk of severe clinical course of COVID-19 in carriers of HLA-C* 04: 01 J Weiner 3rd, P Suwalski, M Holtgrewe, A Rakitko, C Thibeault, M Müller, ... EClinicalMedicine 40, 101099, 2021 | 71 | 2021 |
| A recurrent mutation in anaplastic lymphoma kinase with distinct neoepitope conformations JS Toor, AA Rao, AC McShan, M Yarmarkovich, S Nerli, K Yamaguchi, ... Frontiers in immunology 9, 99, 2018 | 33 | 2018 |
| Single-cell transcriptome analysis defines heterogeneity of the murine pancreatic ductal tree AM Hendley, AA Rao, L Leonhardt, S Ashe, JA Smith, S Giacometti, ... Elife 10, e67776, 2021 | 29 | 2021 |
| Longitudinal single-cell epitope and RNA-sequencing reveals the immunological impact of type 1 interferon autoantibodies in critical COVID-19: Anti-IFN antibodies in critical … MGP van der Wijst, SE Vazquez, GC Hartoularos, P Bastard, T Grant, ... BioRxiv, 2021 | 26 | 2021 |
| Holistic characterization of tumor monocyte-to-macrophage differentiation integrates distinct immune phenotypes in kidney cancer AM Mujal, AJ Combes, AA Rao, M Binnewies, B Samad, J Tsui, ... Cancer Immunology Research 10 (4), 403-419, 2022 | 23 | 2022 |
| Sex-stratified single-cell rna-seq analysis identifies sex-specific and cell type-specific transcriptional responses in Alzheimer’s disease across two brain regions SA Belonwu, Y Li, D Bunis, AA Rao, CW Solsberg, A Tang, ... Molecular neurobiology 59 (1), 276-293, 2022 | 22 | 2022 |
| COPS: a sensitive and accurate tool for detecting somatic copy number alterations using short-read sequence data from paired samples NM Krishnan, P Gaur, R Chaudhary, AA Rao, B Panda Public Library of Science 7 (10), e47812, 2012 | 17 | 2012 |
| ProTECT—Prediction of T-Cell Epitopes for Cancer Therapy AA Rao, AA Madejska, J Pfeil, B Paten, SR Salama, D Haussler Frontiers in immunology 11, 483296, 2020 | 16 | 2020 |
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzVerified email at soe.ucsc.edu
