Apratim Mitra
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Analysis of copy number variations among diverse cattle breeds
GE Liu, Y Hou, B Zhu, MF Cardone, L Jiang, A Cellamare, A Mitra, ...
Genome research 20 (5), 693-703, 2010
KRAB-zinc finger protein gene expansion in response to active retrotransposons in the murine lineage
G Wolf, A de Iaco, MA Sun, M Bruno, M Tinkham, D Hoang, A Mitra, ...
Elife 9, e56337, 2020
Circular RNAs and competing endogenous RNA (ceRNA) networks
A Mitra, K Pfeifer, KS Park
Translational cancer research 7 (Suppl 5), S624, 2018
Combgap contributes to recruitment of Polycomb group proteins in Drosophila
P Ray, S De, A Mitra, K Bezstarosti, JAA Demmers, K Pfeifer, JA Kassis
Proceedings of the National Academy of Sciences 113 (14), 3826-3831, 2016
Formation of a polycomb-domain in the absence of strong polycomb response elements
S De, A Mitra, Y Cheng, K Pfeifer, JA Kassis
PLoS genetics 12 (7), e1006200, 2016
Body condition scoring for adult zebrafish (Danio rerio)
TS Clark, LM Pandolfo, CM Marshall, AK Mitra, JM Schech
Journal of the American Association for Laboratory Animal Science 57 (6 …, 2018
Genome-wide copy number variant analysis in inbred chickens lines with different susceptibility to Marek’s disease
J Luo, Y Yu, A Mitra, S Chang, H Zhang, G Liu, N Yang, J Song
G3: Genes| Genomes| Genetics 3 (2), 217-223, 2013
Temporal transcriptome changes induced by MDV in Marek's disease-resistant and-susceptible inbred chickens
Y Yu, J Luo, A Mitra, S Chang, F Tian, H Zhang, P Yuan, H Zhou, J Song
BMC genomics 12, 1-12, 2011
Enhancer–promoter interactions can bypass CTCF-mediated boundaries and contribute to phenotypic robustness
S Chakraborty, N Kopitchinski, Z Zuo, A Eraso, P Awasthi, R Chari, A Mitra, ...
Nature genetics 55 (2), 280-290, 2023
CD5 dynamically calibrates basal NF-κB signaling in T cells during thymic development and peripheral activation
CA Matson, S Choi, F Livak, B Zhao, A Mitra, PE Love, NJ Singh
Proceedings of the National Academy of Sciences 117 (25), 14342-14353, 2020
Somatic SMAD3-activating mutations cause melorheostosis by up-regulating the TGF-β/SMAD pathway
H Kang, S Jha, A Ivovic, N Fratzl-Zelman, Z Deng, A Mitra, WA Cabral, ...
Journal of Experimental Medicine 217 (5), 2020
Histone methylation analysis and pathway predictions in chickens after MDV infection
J Luo, A Mitra, F Tian, S Chang, H Zhang, K Cui, Y Yu, K Zhao, J Song
Public Library of Science 7 (7), e41849, 2012
Loss of imprinting mutations define both distinct and overlapping roles for misexpression of IGF2 and of H19 lncRNA
KS Park, A Mitra, B Rahat, K Kim, K Pfeifer
Nucleic Acids Research 45 (22), 12766-12779, 2017
Functional genomic analysis of variation on beef tenderness induced by acute stress in Angus cattle
C Zhao, F Tian, Y Yu, J Luo, A Mitra, F Zhan, Y Hou, G Liu, L Zan, ...
International Journal of Genomics 2012, 2012
Instabilities in single-species and host-parasite systems: Period-doubling bifurcations and chaos
JC Misra, A Mitra
Computers & Mathematics with Applications 52 (3), 525-538, 2006
Genome-wide bovine H3K27me3 modifications and the regulatory effects on genes expressions in peripheral blood lymphocytes
Y He, Y Yu, Y Zhang, J Song, A Mitra, Y Zhang, Y Wang, D Sun, S Zhang
PloS one 7 (6), e39094, 2012
Linkage-specific deubiquitylation by OTUD5 defines an embryonic pathway intolerant to genomic variation
DB Beck, MA Basar, AJ Asmar, JJ Thompson, H Oda, DT Uehara, K Saida, ...
Science advances 7 (4), eabe2116, 2021
Marek’s disease virus infection induces widespread differential chromatin marks in inbred chicken lines
A Mitra, J Luo, H Zhang, K Cui, K Zhao, J Song
BMC genomics 13, 1-12, 2012
Extensive co-binding and rapid redistribution of NANOG and GATA6 during emergence of divergent lineages
JJ Thompson, DJ Lee, A Mitra, S Frail, RK Dale, PP Rocha
Nature Communications 13 (1), 4257, 2022
Transcriptional heterogeneity of ventricular zone cells in the ganglionic eminences of the mouse forebrain
DR Lee, C Rhodes, A Mitra, Y Zhang, D Maric, RK Dale, TJ Petros
Elife 11, e71864, 2022
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