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Sayaka Miura
Sayaka Miura
Verified email at temple.edu
Title
Cited by
Cited by
Year
Origins and evolution of microRNA genes in plant species
M Nozawa, S Miura, M Nei
Genome biology and evolution 4 (3), 230-239, 2012
2722012
The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study
JP Townsend, HB Hassler, Z Wang, S Miura, J Singh, S Kumar, ...
The Lancet Microbe 2 (12), e666-e675, 2021
1792021
Origins and Evolution of MicroRNA Genes in Drosophila Species
M Nozawa, S Miura, M Nei
Genome biology and evolution 2, 180-189, 2010
1232010
An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic
S Kumar, Q Tao, S Weaver, M Sanderford, MA Caraballo-Ortiz, S Sharma, ...
Molecular Biology and Evolution 38 (8), 3046-3059, 2021
732021
Predicting clone genotypes from tumor bulk sequencing of multiple samples
S Miura, K Gomez, O Murillo, LA Huuki, T Vu, T Buturla, S Kumar
Bioinformatics 34 (23), 4017-4026, 2018
342018
Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data
S Miura, T Vu, J Deng, T Buturla, O Oladeinde, J Choi, S Kumar
Scientific Reports 10 (1), 3498, 2020
322020
Computational enhancement of single-cell sequences for inferring tumor evolution
S Miura, LA Huuki, T Buturla, T Vu, K Gomez, S Kumar
Bioinformatics 34 (17), i917-i926, 2018
292018
Somatic evolutionary timings of driver mutations
K Gomez, S Miura, LA Huuki, BS Spell, JP Townsend, S Kumar
BMC cancer 18, 1-10, 2018
242018
A new method for inferring timetrees from temporally sampled molecular sequences
S Miura, K Tamura, Q Tao, LA Huuki, SL Kosakovsky Pond, J Priest, ...
PLOS Computational Biology 16 (1), e1007046, 2020
222020
Evolutionary Changes of the Target Sites of Two MicroRNAs Encoded in the Hox Gene Cluster of Drosophila and Other Insect Species
S Miura, M Nozawa, M Nei
Genome Biology and Evolution 3, 129-139, 2011
212011
Molecular evidence for SARS-CoV-2 in samples collected from patients with Morbilliform eruptions since late summer 2019 in Lombardy, Northern Italy
A Amendola, M Canuti, S Bianchi, S Kumar, C Fappani, M Gori, D Colzani, ...
152021
Delineation of tumor migration paths by using a bayesian biogeographic approach
A Chroni, T Vu, S Miura, S Kumar
Cancers 11 (12), 1880, 2019
112019
Molecular evidence for SARS-CoV-2 in samples collected from patients with morbilliform eruptions since late 2019 in Lombardy, northern Italy
A Amendola, M Canuti, S Bianchi, S Kumar, C Fappani, M Gori, D Colzani, ...
Environmental Research 215, 113979, 2022
102022
PathFinder: Bayesian inference of clone migration histories in cancer
S Kumar, A Chroni, K Tamura, M Sanderford, O Oladeinde, V Aly, T Vu, ...
Bioinformatics 36 (Supplement_2), i675-i683, 2020
102020
Migrations of cancer cells through the lens of phylogenetic biogeography
A Chroni, S Miura, O Oladeinde, V Aly, S Kumar
Scientific Reports 11 (1), 17184, 2021
92021
Random fluctuation of selection coefficients and the extent of nucleotide variation in human populations
S Miura, Z Zhang, M Nei
Proceedings of the National Academy of Sciences 110 (26), 10676-10681, 2013
92013
TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity
MA Caraballo-Ortiz, S Miura, M Sanderford, T Dolker, Q Tao, S Weaver, ...
Bioinformatics 38 (10), 2719-2726, 2022
82022
Clone phylogenetics reveals metastatic tumor migrations, maps, and models
A Chroni, S Miura, L Hamilton, T Vu, SG Gaffney, V Aly, S Karim, ...
Cancers 14 (17), 4326, 2022
42022
A phylogenetic approach to study the evolution of somatic mutational processes in cancer
S Miura, T Vu, J Choi, JP Townsend, S Karim, S Kumar
Communications Biology 5 (1), 617, 2022
42022
Using disease-associated coding sequence variation to investigate functional compensation by human paralogous proteins
S Miura, S Tate, S Kumar
Evolutionary Bioinformatics 11, EBO. S30594, 2015
22015
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Articles 1–20