Pedro T. Monteiro
Pedro T. Monteiro
Instituto Superior Técnico - Universidade de Lisboa / INESC-ID
Verified email at tecnico.ulisboa.pt - Homepage
Title
Cited by
Cited by
Year
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
MC Teixeira, P Monteiro, P Jain, S Tenreiro, AR Fernandes, NP Mira, ...
Nucleic acids research 34 (suppl 1), D446-D451, 2006
5562006
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods
AP Francisco, C Vaz, PT Monteiro, J Melo-Cristino, M Ramirez, JA Carriço
BMC bioinformatics 13 (1), 1-10, 2012
3522012
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ...
Nucleic acids research 42 (D1), D161-D166, 2014
2522014
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenço, ...
Nucleic acids research 39 (suppl 1), D136-D140, 2011
2082011
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
PT Monteiro, ND Mendes, MC Teixeira, S d’Orey, S Tenreiro, NP Mira, ...
Nucleic acids research 36 (suppl 1), D132-D136, 2008
1832008
Endosomal WASH and exocyst complexes control exocytosis of MT1-MMP at invadopodia
P Monteiro, C Rossé, A Castro-Castro, M Irondelle, E Lagoutte, ...
Journal of Cell Biology 203 (6), 1063-1079, 2013
1402013
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ...
BMC systems biology 7 (1), 135, 2013
1112013
Cellular and molecular mechanisms of MT1-MMP-dependent cancer cell invasion
A Castro-Castro, V Marchesin, P Monteiro, C Lodillinsky, C Rossé, ...
Annual review of cell and developmental biology 32, 555-576, 2016
1062016
Temporal logic patterns for querying dynamic models of cellular interaction networks
PT Monteiro, D Ropers, R Mateescu, AT Freitas, H De Jong
Bioinformatics 24 (16), i227-i233, 2008
1032008
Logical modeling and dynamical analysis of cellular networks
W Abou-Jaoudé, P Traynard, PT Monteiro, J Saez-Rodriguez, T Helikar, ...
Frontiers in genetics 7, 94, 2016
1022016
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, M Palma, C Costa, CP Godinho, P Pais, ...
Nucleic acids research 46 (D1), D348-D353, 2018
842018
Efficient parameter search for qualitative models of regulatory networks using symbolic model checking
G Batt, M Page, I Cantone, G Goessler, P Monteiro, H De Jong
Bioinformatics 26 (18), i603-i610, 2010
702010
Model checking to assess T-helper cell plasticity
W Abou-Jaoudé, PT Monteiro, A Naldi, M Grandclaudon, V Soumelis, ...
Frontiers in bioengineering and biotechnology 2, 86, 2015
692015
Control of MT1-MMP transport by atypical PKC during breast-cancer progression
C Rossé, C Lodillinsky, L Fuhrmann, M Nourieh, P Monteiro, M Irondelle, ...
Proceedings of the National Academy of Sciences 111 (18), E1872-E1879, 2014
692014
Dynamical modeling and analysis of large cellular regulatory networks
D Bérenguier, C Chaouiya, PT Monteiro, A Naldi, E Remy, D Thieffry, ...
Chaos: An Interdisciplinary Journal of Nonlinear Science 23 (2), 025114, 2013
602013
Cooperative development of logical modelling standards and tools with CoLoMoTo
A Naldi, PT Monteiro, C Müssel, HA Kestler, D Thieffry, I Xenarios, ...
Bioinformatics 31 (7), 1154-1159, 2015
472015
Genetic Network Analyzer: A Tool for the Qualitative Modeling and Simulation of Bacterial Regulatory Networks
G Batt, B Besson, H de Jong, E Dumas, J Geiselmann, R Monte, ...
Bacterial Molecular Networks, 439-462, 2012
322012
The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts
PT Monteiro, P Pais, C Costa, S Manna, I Sá-Correia, MC Teixeira
Nucleic acids research 45 (D1), D597-D603, 2017
272017
Oxidative stress in cells with extra centrosomes drives non-cell-autonomous invasion
T Arnandis, P Monteiro, SD Adams, VL Bridgeman, V Rajeeve, ...
Developmental cell 47 (4), 409-424. e9, 2018
262018
Logical modeling and analysis of cellular regulatory networks with ginsim 3.0
A Naldi, C Hernandez, W Abou-Jaoudé, PT Monteiro, C Chaouiya, ...
Frontiers in physiology 9, 646, 2018
232018
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Articles 1–20