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Year
The Amber biomolecular simulation programs
DA Case, TE Cheatham III, T Darden, H Gohlke, R Luo, KM Merz Jr, ...
Journal of computational chemistry 26 (16), 1668-1688, 2005
25689*2005
AMBER 10; University of California: San Francisco, 2008
DA Case, TA Darden, TE Cheatham III, CL Simmerling, J Wang, RE Duke, ...
Google Scholar There is no corresponding record for this reference, 2008
5292008
ADME evaluation in drug discovery. 4. Prediction of aqueous solubility based on atom contribution approach
TJ Hou, K Xia, W Zhang, XJ Xu
Journal of chemical information and computer sciences 44 (1), 266-275, 2004
3002004
An accurate and simple quantum model for liquid water
F Paesani, W Zhang, DA Case, TE Cheatham, GA Voth
The Journal of chemical physics 125 (18), 2006
2562006
ADME evaluation in drug discovery. 7. Prediction of oral absorption by correlation and classification
T Hou, J Wang, W Zhang, X Xu
Journal of chemical information and modeling 47 (1), 208-218, 2007
2372007
ADME evaluation in drug discovery. 5. Correlation of Caco-2 permeation with simple molecular properties
TJ Hou, W Zhang, K Xia, XB Qiao, XJ Xu
Journal of chemical information and computer sciences 44 (5), 1585-1600, 2004
2312004
GTPase activation of elongation factor EF‐Tu by the ribosome during decoding
JC Schuette, FV Murphy IV, AC Kelley, JR Weir, J Giesebrecht, ...
The EMBO journal 28 (6), 755-765, 2009
2152009
Characterization of domain–peptide interaction interface: a case study on the amphiphysin-1 SH3 domain
T Hou, W Zhang, DA Case, W Wang
Journal of molecular biology 376 (4), 1201-1214, 2008
2142008
ADME evaluation in drug discovery. 6. Can oral bioavailability in humans be effectively predicted by simple molecular property-based rules?
T Hou, J Wang, W Zhang, X Xu
Journal of Chemical Information and Modeling 47 (2), 460-463, 2007
2092007
Recent advances in computational prediction of drug absorption and permeability in drug discovery
T Hou, J Wang, W Zhang, W Wang, X Xu
Current medicinal chemistry 13 (22), 2653-2667, 2006
1862006
A 3D structure database of components from Chinese traditional medicinal herbs
X Qiao, T Hou, W Zhang, SL Guo, X Xu
Journal of chemical information and computer sciences 42 (3), 481-489, 2002
1502002
Development of reliable aqueous solubility models and their application in druglike analysis
J Wang, G Krudy, T Hou, W Zhang, G Holland, X Xu
Journal of chemical information and modeling 47 (4), 1395-1404, 2007
1402007
Characterization of Domain-Peptide Interaction Interface: A Generic Structure-based Model to Decipher the Binding Specificity of SH3 Domains* S
T Hou, Z Xu, W Zhang, WA McLaughlin, DA Case, Y Xu, W Wang
Molecular & cellular proteomics 8 (4), 639-649, 2009
1302009
AmberTools
DA Case, HM Aktulga, K Belfon, DS Cerutti, GA Cisneros, VWD Cruzeiro, ...
Journal of chemical information and modeling 63 (20), 6183-6191, 2023
1222023
AMBER, version 11
DA Case, TA Darden, TE Cheatham, CL Simmerling, J Wang, RE Duke, ...
University of California, San Francisco, 1-300, 2010
1202010
Recent developments of in silico predictions of intestinal absorption and oral bioavailability
T Hou, Y Li, W Zhang, J Wang
Combinatorial Chemistry & High Throughput Screening 12 (5), 497-506, 2009
1022009
Antiviral compounds from traditional Chinese medicines Galla Chinese as inhibitors of HCV NS3 protease
D Duan, Z Li, H Luo, W Zhang, L Chen, X Xu
Bioorganic & medicinal chemistry letters 14 (24), 6041-6044, 2004
982004
Quantum dynamical effects in liquid water: A semiclassical study on the diffusion and the infrared absorption spectrum
J Liu, WH Miller, F Paesani, W Zhang, DA Case
The Journal of chemical physics 131 (16), 2009
932009
Predicting drug resistance of the HIV‐1 protease using molecular interaction energy components
T Hou, W Zhang, J Wang, W Wang
Proteins: Structure, Function, and Bioinformatics 74 (4), 837-846, 2009
882009
Heterogeneity of large macromolecular complexes revealed by 3D cryo-EM variance analysis
W Zhang, M Kimmel, CMT Spahn, PA Penczek
Structure 16 (12), 1770-1776, 2008
882008
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