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Zahra Shamsi
Zahra Shamsi
Software Engineer, Google Research
Verified email at google.com
Title
Cited by
Cited by
Year
Reinforcement learning based adaptive sampling: REAPing rewards by exploring protein conformational landscapes
Z Shamsi, KJ Cheng, D Shukla
The Journal of Physical Chemistry B 122 (35), 8386-8395, 2018
952018
Universality of the sodium ion binding mechanism in class AG‐protein‐coupled receptors
B Selvam, Z Shamsi, D Shukla
Angewandte Chemie 130 (12), 3102-3107, 2018
522018
Enhanced unbiased sampling of protein dynamics using evolutionary coupling information
Z Shamsi, AS Moffett, D Shukla
Scientific reports 7 (1), 12700, 2017
482017
TLmutation: predicting the effects of mutations using transfer learning
Z Shamsi, M Chan, D Shukla
The Journal of Physical Chemistry B 124 (19), 3845-3854, 2020
272020
Application of Hidden Markov Models in Biomolecular Simulations
S Shukla, Z Shamsi, AS Moffett, B Selvam, D Shukla
Methods in Molecular Biology, 2016
112016
How does evolution design functional free energy landscapes of proteins? A case study on the emergence of regulation in the Cyclin Dependent Kinase family
Z Shamsi, D Shukla
Molecular Systems Design & Engineering 5 (1), 392-400, 2020
42020
Automated Deep Aberration Detection from Chromosome Karyotype Images.
Z Shamsi, D Bryant, J Wilson, X Qu, A Dubey, K Kothari, M Dehghani, ...
URL: http://arxiv. org/abs/2211.14312, 2022
12022
Publisher Correction: Enhanced unbiased sampling of protein dynamics using evolutionary coupling information
Z Shamsi, AS Moffett, D Shukla
Scientific Reports 7 (1), 18102, 2017
12017
Controller Design for Processes with Unknown Dynamics and Input Nonlinearity with Applications to Bioreactors
Z Shamsi, M Shahrokhi
Industrial & Engineering Chemistry Research 55 (9), 2584-2593, 2016
12016
NPSV-deep: a deep learning method for genotyping structural variants in short read genome sequencing data
MD Linderman, J Wallace, A van der Heyde, E Wieman, D Brey, Y Shi, ...
Bioinformatics 40 (3), btae129, 2024
2024
Structural variant evaluation through iterative genome construction
LL Ali Bashir, Zahra Shamsi, Wesley Wei Qian, Tze Way Eugene Ie, Jeffrey ...
US Patent US20240047010A1, 2024
2024
42. Automated deep aberration detection from chromosome karyotype images
M Fang, Z Shamsi, D Bryant, J Wilson, X Qu, A Dubey, K Kothari, ...
Cancer Genetics 278, 13, 2023
2023
Billion-years old proteins show the importance of N-lobe orientation in Imatinib-kinase selectivity
Z Shamsi, D Shukla
arXiv preprint arXiv:2303.15586, 2023
2023
Karyotype AI for Precision Oncology
Z Shamsi, D Bryant, J Wilson, X Qu, A Dubey, K Kothari, M Dehghani, ...
arXiv preprint arXiv:2211.14312, 2022
2022
Evolution of protein structure function
Z Shamsi
University of Illinois at Urbana-Champaign, 2019
2019
Concestor kinase activation mechanism uncovers the cyclin dependence of CDK family kinases
Z Shamsi, D Shukla
bioRxiv, 410902, 2018
2018
Efficient Unbiased Sampling of Protein Dynamics using Reinforcement Learning
Z Shamsi, D Shukla
Biophysical Journal 114 (3), 673a, 2018
2018
Reconstructing Ancient Sequences to Understand the Structure and Function Relationships of Modern Proteins
Z Shamsi, A Moffett, D Shukla
2017 AIChE Annual Meeting, 2017
2017
کنترل زیست توده در یک بیوراکتور به کمک شبکه عصبی تطبیقی
زهرا شمسی - محمد شاهرخی
15th Iranian National Congress of Chemical Engineering, 2015
2015
Supplementary Information for: Enhanced unbiased sampling of protein dynamics using evolutionary coupling information
Z Shamsi, AS Moffett, D Shukla
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