Yi Zheng
Yi Zheng
Boyce Thompson Institute
Verified email at cornell.edu
Cited by
Cited by
The tomato genome sequence provides insights into fleshy fruit evolution
Tomato Genome Consortium
Nature 485 (7400), 635, 2012
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions
S Guo, J Zhang, H Sun, J Salse, WJ Lucas, H Zhang, Y Zheng, L Mao, ...
Nature genetics 45 (1), 51-58, 2013
Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
S Zhong, Z Fei, YR Chen, Y Zheng, M Huang, J Vrebalov, R McQuinn, ...
Nature biotechnology 31 (2), 154-159, 2013
High-throughput illumina strand-specific RNA sequencing library preparation
S Zhong, JG Joung, Y Zheng, Y Chen, B Liu, Y Shao, JZ Xiang, Z Fei, ...
Cold spring harbor protocols 2011 (8), pdb. prot5652, 2011
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
S Guo, Y Zheng, JG Joung, S Liu, Z Zhang, OR Crasta, BW Sobral, Y Xu, ...
BMC genomics 11 (1), 384, 2010
Tissue-and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation
AJ Matas, TH Yeats, GJ Buda, Y Zheng, S Chatterjee, T Tohge, L Ponnala, ...
The Plant Cell 23 (11), 3893-3910, 2011
iTAK: a program for genome-wide prediction and classification of plant transcription factors, transcriptional regulators, and protein kinases
Y Zheng, C Jiao, H Sun, HG Rosli, MA Pombo, P Zhang, M Banf, X Dai, ...
Molecular plant 9 (12), 1667-1670, 2016
Evolution and expression analysis of the grape (Vitis vinifera L.) WRKY gene family
C Guo, R Guo, X Xu, M Gao, X Li, J Song, Y Zheng, X Wang
Journal of experimental botany 65 (6), 1513-1528, 2014
The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance
W Chen, DK Hasegawa, N Kaur, A Kliot, PV Pinheiro, J Luan, ...
BMC biology 14 (1), 1-15, 2016
iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences
Y Zheng, L Zhao, J Gao, Z Fei
BMC bioinformatics 12 (1), 453, 2011
Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles
S Guo, J Liu, Y Zheng, M Huang, H Zhang, G Gong, H He, Y Ren, ...
BMC genomics 12 (1), 454, 2011
Tomato GOLDEN2-LIKE transcription factors reveal molecular gradients that function during fruit development and ripening
CV Nguyen, JT Vrebalov, NE Gapper, Y Zheng, S Zhong, Z Fei, ...
The Plant Cell 26 (2), 585-601, 2014
Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity
HG Rosli, Y Zheng, MA Pombo, S Zhong, A Bombarely, Z Fei, A Collmer, ...
Genome biology 14 (12), 1-15, 2013
RhNAC2 and RhEXPA4 are involved in the regulation of dehydration tolerance during the expansion of rose petals
F Dai, C Zhang, X Jiang, M Kang, X Yin, P Lü, X Zhang, Y Zheng, J Gao
Plant physiology 160 (4), 2064-2082, 2012
VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs
Y Zheng, S Gao, C Padmanabhan, R Li, M Galvez, D Gutierrez, S Fuentes, ...
Virology 500, 130-138, 2017
Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics
Z Fei, JG Joung, X Tang, Y Zheng, M Huang, JM Lee, R McQuinn, ...
Nucleic acids research 39 (suppl_1), D1156-D1163, 2010
Genome-wide identification and analysis of the SBP-box family genes in apple (Malus× domestica Borkh.)
J Li, H Hou, X Li, J Xiang, X Yin, H Gao, Y Zheng, CL Bassett, X Wang
Plant Physiology and Biochemistry 70, 100-114, 2013
An NAC transcription factor controls ethylene-regulated cell expansion in flower petals
H Pei, N Ma, J Tian, J Luo, J Chen, J Li, Y Zheng, X Chen, Z Fei, J Gao
Plant Physiology 163 (2), 775-791, 2013
Comprehensive tissue-specific transcriptome analysis reveals distinct regulatory programs during early tomato fruit development
RJ Pattison, F Csukasi, Y Zheng, Z Fei, E van der Knaap, C Catalá
Plant physiology 168 (4), 1684-1701, 2015
Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit
S Grassi, G Piro, JM Lee, Y Zheng, Z Fei, G Dalessandro, JJ Giovannoni, ...
BMC genomics 14 (1), 781, 2013
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