|The tomato genome sequence provides insights into fleshy fruit evolution|
Tomato Genome Consortium
Nature 485 (7400), 635, 2012
|The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions|
S Guo, J Zhang, H Sun, J Salse, WJ Lucas, H Zhang, Y Zheng, L Mao, ...
Nature genetics 45 (1), 51-58, 2013
|Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening|
S Zhong, Z Fei, YR Chen, Y Zheng, M Huang, J Vrebalov, R McQuinn, ...
Nature biotechnology 31 (2), 154-159, 2013
|High-throughput illumina strand-specific RNA sequencing library preparation|
S Zhong, JG Joung, Y Zheng, Y Chen, B Liu, Y Shao, JZ Xiang, Z Fei, ...
Cold spring harbor protocols 2011 (8), pdb. prot5652, 2011
|Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types|
S Guo, Y Zheng, JG Joung, S Liu, Z Zhang, OR Crasta, BW Sobral, Y Xu, ...
BMC genomics 11 (1), 384, 2010
|Tissue-and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation|
AJ Matas, TH Yeats, GJ Buda, Y Zheng, S Chatterjee, T Tohge, L Ponnala, ...
The Plant Cell 23 (11), 3893-3910, 2011
|iTAK: a program for genome-wide prediction and classification of plant transcription factors, transcriptional regulators, and protein kinases|
Y Zheng, C Jiao, H Sun, HG Rosli, MA Pombo, P Zhang, M Banf, X Dai, ...
Molecular plant 9 (12), 1667-1670, 2016
|Evolution and expression analysis of the grape (Vitis vinifera L.) WRKY gene family|
C Guo, R Guo, X Xu, M Gao, X Li, J Song, Y Zheng, X Wang
Journal of experimental botany 65 (6), 1513-1528, 2014
|The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance|
W Chen, DK Hasegawa, N Kaur, A Kliot, PV Pinheiro, J Luan, ...
BMC biology 14 (1), 1-15, 2016
|iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences|
Y Zheng, L Zhao, J Gao, Z Fei
BMC bioinformatics 12 (1), 453, 2011
|Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles|
S Guo, J Liu, Y Zheng, M Huang, H Zhang, G Gong, H He, Y Ren, ...
BMC genomics 12 (1), 454, 2011
|Tomato GOLDEN2-LIKE transcription factors reveal molecular gradients that function during fruit development and ripening|
CV Nguyen, JT Vrebalov, NE Gapper, Y Zheng, S Zhong, Z Fei, ...
The Plant Cell 26 (2), 585-601, 2014
|Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity|
HG Rosli, Y Zheng, MA Pombo, S Zhong, A Bombarely, Z Fei, A Collmer, ...
Genome biology 14 (12), 1-15, 2013
|RhNAC2 and RhEXPA4 are involved in the regulation of dehydration tolerance during the expansion of rose petals|
F Dai, C Zhang, X Jiang, M Kang, X Yin, P Lü, X Zhang, Y Zheng, J Gao
Plant physiology 160 (4), 2064-2082, 2012
|VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs|
Y Zheng, S Gao, C Padmanabhan, R Li, M Galvez, D Gutierrez, S Fuentes, ...
Virology 500, 130-138, 2017
|Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics|
Z Fei, JG Joung, X Tang, Y Zheng, M Huang, JM Lee, R McQuinn, ...
Nucleic acids research 39 (suppl_1), D1156-D1163, 2010
|Genome-wide identification and analysis of the SBP-box family genes in apple (Malus× domestica Borkh.)|
J Li, H Hou, X Li, J Xiang, X Yin, H Gao, Y Zheng, CL Bassett, X Wang
Plant Physiology and Biochemistry 70, 100-114, 2013
|An NAC transcription factor controls ethylene-regulated cell expansion in flower petals|
H Pei, N Ma, J Tian, J Luo, J Chen, J Li, Y Zheng, X Chen, Z Fei, J Gao
Plant Physiology 163 (2), 775-791, 2013
|Comprehensive tissue-specific transcriptome analysis reveals distinct regulatory programs during early tomato fruit development|
RJ Pattison, F Csukasi, Y Zheng, Z Fei, E van der Knaap, C Catalá
Plant physiology 168 (4), 1684-1701, 2015
|Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit|
S Grassi, G Piro, JM Lee, Y Zheng, Z Fei, G Dalessandro, JJ Giovannoni, ...
BMC genomics 14 (1), 781, 2013