Jeff Hammerbacher
Jeff Hammerbacher
Principal Investigator at Hammer Lab
Verified email at - Homepage
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Genomic features of response to combination immunotherapy in patients with advanced non-small-cell lung cancer
MD Hellmann, T Nathanson, H Rizvi, BC Creelan, F Sanchez-Vega, ...
Cancer cell 33 (5), 843-852. e4, 2018
MHCflurry: open-source class I MHC binding affinity prediction
TJ O'Donnell, A Rubinsteyn, M Bonsack, AB Riemer, U Laserson, ...
Cell systems 7 (1), 129-132. e4, 2018
Contribution of systemic and somatic factors to clinical response and resistance to PD-L1 blockade in urothelial cancer: an exploratory multi-omic analysis
A Snyder, T Nathanson, SA Funt, A Ahuja, J Buros Novik, MD Hellmann, ...
PLoS medicine 14 (5), e1002309, 2017
Beautiful data: the stories behind elegant data solutions
T Segaran, J Hammerbacher
" O'Reilly Media, Inc.", 2009
Defining HLA-II Ligand Processing and Binding Rules with Mass Spectrometry Enhances Cancer Epitope Prediction
JG Abelin, D Harjanto, M Malloy, P Suri, T Colson, SP Goulding, ...
Immunity 51 (4), 766-779. e17, 2019
Rethinking data-intensive science using scalable analytics systems
FA Nothaft, M Massie, T Danford, Z Zhang, U Laserson, C Yeksigian, ...
Proceedings of the 2015 ACM SIGMOD International Conference on Management of …, 2015
T cells genetically engineered to overcome death signaling enhance adoptive cancer immunotherapy
TN Yamamoto, PH Lee, SK Vodnala, D Gurusamy, RJ Kishton, Z Yu, ...
The Journal of clinical investigation 129 (4), 1551-1565, 2019
Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade
T Nathanson, A Ahuja, A Rubinsteyn, BA Aksoy, MD Hellmann, D Miao, ...
Cancer Immunology Research 5 (1), 84-91, 2017
Using a machine learning approach to predict outcomes after radiosurgery for cerebral arteriovenous malformations
EK Oermann, A Rubinsteyn, D Ding, J Mascitelli, RM Starke, JB Bederson, ...
Scientific reports 6 (1), 1-12, 2016
Coral: Clear and customizable visualization of human kinome data
KS Metz, EM Deoudes, ME Berginski, I Jimenez-Ruiz, BA Aksoy, ...
Cell systems 7 (3), 347-350. e1, 2018
PI3Kδ inhibition enhances the antitumor fitness of adoptively transferred CD8+ T cells
JS Bowers, K Majchrzak, M Nelson, BA Aksoy, MM Wyatt, AS Smith, ...
Frontiers in Immunology 8, 1221, 2017
Anti–CTLA-4 Activates Intratumoral NK Cells and Combined with IL15/IL15Rα Complexes Enhances Tumor Control
E Sanseviero, EM O’Brien, JR Karras, TB Shabaneh, BA Aksoy, W Xu, ...
Cancer immunology research 7 (8), 1371-1380, 2019
Computational pipeline for the PGV-001 neoantigen vaccine trial
A Rubinsteyn, J Kodysh, I Hodes, S Mondet, BA Aksoy, JP Finnigan, ...
Frontiers in immunology 8, 1807, 2018
Cytokit: A single-cell analysis toolkit for high dimensional fluorescent microscopy imaging
E Czech, BA Aksoy, P Aksoy, J Hammerbacher
BMC bioinformatics 20 (1), 1-13, 2019
Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer
T O’Donnell, EL Christie, A Ahuja, J Buros, BA Aksoy, DDL Bowtell, ...
BMC cancer 18 (1), 1-11, 2018
Information platforms and the rise of the data scientist
J Hammerbacher, T Segaran
Beautiful data: the stories behind elegant data solutions, 73-84, 2009
How will big data improve clinical and basic research in radiation therapy?
BS Rosenstein, J Capala, JA Efstathiou, J Hammerbacher, SL Kerns, ...
International Journal of Radiation Oncology* Biology* Physics 95 (3), 895-904, 2016
Joint longitudinal and time-to-event models for multilevel hierarchical data
SL Brilleman, MJ Crowther, M Moreno-Betancur, J Buros Novik, J Dunyak, ...
Statistical methods in medical research 28 (12), 3502-3515, 2019
pileup. js: a JavaScript library for interactive and in-browser visualization of genomic data
D Vanderkam, BA Aksoy, I Hodes, J Perrone, J Hammerbacher
Bioinformatics 32 (15), 2378-2379, 2016
Informatics for cancer immunotherapy
J Hammerbacher, A Snyder
Annals of Oncology 28, xii56-xii73, 2017
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