| Deep learning analysis of vibrational spectra of bacterial lysate for rapid antimicrobial susceptibility testing WJ Thrift, S Ronaghi, M Samad, H Wei, DG Nguyen, AS Cabuslay, ... ACS nano 14 (11), 15336-15348, 2020 | 85 | 2020 |
| Longitudinal Monitoring of Biofilm Formation via Robust Surface-Enhanced Raman Scattering Quantification of Pseudomonas aeruginosa-Produced Metabolites CQ Nguyen, WJ Thrift, A Bhattacharjee, S Ranjbar, T Gallagher, ... ACS applied materials & interfaces 10 (15), 12364-12373, 2018 | 62 | 2018 |
| Quantification of analyte concentration in the single molecule regime using convolutional neural networks WJ Thrift, R Ragan Analytical chemistry 91 (21), 13337-13342, 2019 | 54 | 2019 |
| Large continuous mechanical gradient formation via metal–ligand interactions JA Neal, NJ Oldenhuis, AL Novitsky, EM Samson, WJ Thrift, R Ragan, ... Angewandte Chemie International Edition 56 (49), 15575-15579, 2017 | 47 | 2017 |
| Driving chemical reactions in plasmonic nanogaps with electrohydrodynamic flow WJ Thrift, CQ Nguyen, M Darvishzadeh-Varcheie, S Zare, N Sharac, ... ACS nano 11 (11), 11317-11329, 2017 | 39 | 2017 |
| Surface-enhanced Raman scattering-based odor compass: Locating multiple chemical sources and pathogens WJ Thrift, A Cabuslay, AB Laird, S Ranjbar, AI Hochbaum, R Ragan ACS sensors 4 (9), 2311-2319, 2019 | 38 | 2019 |
| Sensing antibiotics in wastewater using surface-enhanced Raman scattering YH Huang, H Wei, PJ Santiago, WJ Thrift, R Ragan, S Jiang Environmental science & technology 57 (12), 4880-4891, 2023 | 14 | 2023 |
| Surface enhanced Raman scattering for detection of Pseudomonas aeruginosa quorum sensing compounds W Thrift, A Bhattacharjee, M Darvishzadeh-Varcheie, Y Lu, A Hochbaum, ... Biosensing and Nanomedicine VIII 9550, 34-46, 2015 | 10 | 2015 |
| Robust SERS spectral analysis for quantitative detection of pyocyanin in biological fluids C Nguyen, W Thrift, A Bhattacharjee, K Whiteson, A Hochbaum, R Ragan Biosensing and Nanomedicine X 10352, 9-16, 2017 | 9 | 2017 |
| The influence of distance between microbubbles on the fluid flow produced during ultrasound exposure CE Schutt, SD Ibsen, W Thrift, SC Esener The Journal of the Acoustical Society of America 136 (6), 3422-3430, 2014 | 7 | 2014 |
| Bridging the Gap between Crosslinking Chemistry and Directed Assembly of Metasurfaces Using Electrohydrodynamic Flow W Thrift, C Nguyen, M Darvishzadeh-Varcheie, N Sharac, R Sanderson, ... arXiv preprint arXiv:1609.06964, 2016 | 6 | 2016 |
| Two-scale structure for giant field enhancement: combination of Rayleigh anomaly and colloidal plasmonic resonance M Darvishzadeh-Varcheie, WJ Thrift, M Kamandi, R Ragan, F Capolino Physical Review Applied 11 (5), 054057, 2019 | 5 | 2019 |
| Improved regressions with convolutional neural networks for surface enhanced Raman scattering sensing of metabolite biomarkers WJ Thrift, CQ Nguyen, J Wang, JE Kahn, R Dong, AB Laird, R Ragan Nanoengineering: Fabrication, Properties, Optics, Thin Films, and Devices …, 2019 | 4 | 2019 |
| Templated electrokinetic directed chemical assembly for the fabrication of close-packed plasmonic metamolecules WJ Thrift, M Darvishzadeh-Varcheie, F Capolino, R Ragan Plasmonics: Design, Materials, Fabrication, Characterization, and …, 2017 | 3 | 2017 |
| Graph-pMHC: graph neural network approach to mhc class II peptide presentation and antibody immunogenicity WJ Thrift, J Perera, S Cohen, NW Lounsbury, HR Gurung, CM Rose, ... Briefings in Bioinformatics 25 (3), bbae123, 2024 | 2 | 2024 |
| HLApollo: A superior transformer model for pan-allelic peptide-MHC-I presentation prediction, with diverse negative coverage, deconvolution and protein language features WJ Thrift, NW Lounsbury, Q Broadwell, A Heidersbach, E Freund, ... Biorxiv, 2022.12. 08.519673, 2022 | 2 | 2022 |
| Attention-based neural network to predict peptide binding, presentation, and immunogenicity K Liu, NW Lounsbury, WJ Thrift, AQ Broadwell, LY Delamarre, ... US Patent App. 17/378,651, 2022 | 1 | 2022 |
| Using neural networks to predict peptide immunogenicity K Liu, M Salem, WJ Thrift US Patent App. 18/472,669, 2024 | | 2024 |
| Methods and Systems for Rapid Antimicrobial Susceptibility Tests R Ragan, A Hochbaum, WJ Thrift US Patent App. 17/999,674, 2023 | | 2023 |
| Metasurfaces comprised of nanosphere oligomers with uniform narrow gap spacings, their method of fabrication and applications in sensing R Ragan, F Capolino, W Thrift US Patent 11,162,902, 2021 | | 2021 |
