| Technical note on transcription factor motif discovery from importance scores (TF-MoDISco) version 0.5.6.5 A Shrikumar, K Tian, Ž Avsec, A Shcherbina, A Banerjee, M Sharmin, ... arXiv preprint arXiv:1811.00416, 2018 | 127* | 2018 |
| Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays R Movva, P Greenside, GK Marinov, S Nair, A Shrikumar, A Kundaje PLoS One 14 (6), e0218073, 2019 | 84 | 2019 |
| GENCODE: reference annotation for the human and mouse genomes in 2023 A Frankish, S Carbonell-Sala, M Diekhans, I Jungreis, JE Loveland, ... Nucleic acids research 51 (D1), D942-D949, 2023 | 78 | 2023 |
| Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts S Nair, DS Kim, J Perricone, A Kundaje Bioinformatics 35 (14), i108-i116, 2019 | 60 | 2019 |
| ZEB2 Shapes the Epigenetic Landscape of Atherosclerosis P Cheng, RC Wirka, L Shoa Clarke, Q Zhao, R Kundu, T Nguyen, S Nair, ... Circulation 145 (6), 469-485, 2022 | 32 | 2022 |
| Learning to play othello without human knowledge S Thakoor, S Nair, M Jhunjhunwala | 30* | 2017 |
| Single-cell multiome of the human retina and deep learning nominate causal variants in complex eye diseases SK Wang, S Nair, R Li, K Kraft, A Pampari, A Patel, JB Kang, C Luong, ... Cell genomics 2 (8), 2022 | 27 | 2022 |
| Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart disease M Ameen, L Sundaram, M Shen, A Banerjee, S Kundu, S Nair, ... Cell 185 (26), 4937-4953. e23, 2022 | 20 | 2022 |
| AP-1 is a temporally regulated dual gatekeeper of reprogramming to pluripotency GJ Markov, T Mai, S Nair, A Shcherbina, YX Wang, DM Burns, A Kundaje, ... Proceedings of the National Academy of Sciences 118 (23), e2104841118, 2021 | 20 | 2021 |
| Neuromorphic hardware accelerated adaptive authentication system M Suri, V Parmar, A Singla, R Malviya, S Nair 2015 IEEE Symposium Series on Computational Intelligence, 1206-1213, 2015 | 17 | 2015 |
| fastISM: performant in silico saturation mutagenesis for convolutional neural networks S Nair, A Shrikumar, J Schreiber, A Kundaje Bioinformatics 38 (9), 2397-2403, 2022 | 14 | 2022 |
| A Simple Alpha (Go) Zero Tutorial S Nair Stanford Blog, 2017, 2017 | 10 | 2017 |
| Accelerating in silico saturation mutagenesis using compressed sensing J Schreiber, S Nair, A Balsubramani, A Kundaje Bioinformatics 38 (14), 3557-3564, 2022 | 8 | 2022 |
| The big win strategy on multi-value network: An improvement over Alphazero approach for 6x6 Othello NY Chang, CH Chen, SS Lin, S Nair Proceedings of the 2018 international conference on machine learning and …, 2018 | 8 | 2018 |
| Bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants A Pampari, A Shcherbina, S Nair, J Schreiber, A Patel, A Wang, S Kundu, ... Manuscript in preparation, 2023 | 6 | 2023 |
| The dynseq browser track shows context-specific features at nucleotide resolution S Nair, A Barrett, D Li, BJ Raney, BT Lee, P Kerpedjiev, V Ramalingam, ... Nature genetics 54 (11), 1581-1583, 2022 | 6* | 2022 |
| Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency S Nair, M Ameen, L Sundaram, A Pampari, J Schreiber, A Balsubramani, ... bioRxiv, 2023 | 4 | 2023 |
| Chromatin accessibility dynamics of neurogenic niche cells reveal defects in neural stem cell adhesion and migration during aging RW Yeo, OY Zhou, BL Zhong, ED Sun, P Navarro Negredo, S Nair, ... Nature Aging 3 (7), 866-893, 2023 | 4 | 2023 |
| A Biomedical Information Extraction Primer for NLP Researchers S Nair arXiv preprint arXiv:1705.05437, 2017 | 4 | 2017 |
| The Impact of Genomic Variation on Function (IGVF) Consortium I Consortium arXiv preprint arXiv:2307.13708, 2023 | | 2023 |
Anshul KundajeAssociate Professor, Dept. of Genetics, Dept. of Computer Science, Stanford UniversityVerified email at stanford.edu
