Marta Szachniuk
Marta Szachniuk
Institute of Computing Science, Poznan University of Technology
Verified email at cs.put.poznan.pl - Homepage
Title
Cited by
Cited by
Year
Automated 3D structure composition for large RNAs
M Popenda, M Szachniuk, M Antczak, KJ Purzycka, P Lukasiak, N Bartol, ...
Nucleic acids research 40 (14), e112-e112, 2012
4092012
RNA-Puzzles Round II: Assessment of RNA structure prediction programs applied to three large RNA structures
Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ...
RNA 21 (6), 1-19, 2015
1342015
RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures
M Popenda, M Szachniuk, M Blazewicz, S Wasik, EK Burke, J Blazewicz, ...
BMC bioinformatics 11 (1), 1-12, 2010
1312010
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ...
Rna 23 (5), 655-672, 2017
1242017
RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures
M Popenda, M Błażewicz, M Szachniuk, RW Adamiak
Nucleic Acids Research 36 (suppl_1), D386-D391, 2008
822008
New functionality of RNAComposer: application to shape the axis of miR160 precursor structure
M Antczak, M Popenda, T Zok, J Sarzynska, T Ratajczak, K Tomczyk, ...
Acta Biochimica Polonica 63 (4), 737-744, 2016
562016
RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs
M Antczak, T Zok, M Popenda, P Lukasiak, RW Adamiak, J Blazewicz, ...
Nucleic acids research 42 (W1), W368-W372, 2014
522014
Automated RNA 3D structure prediction with RNAComposer
M Biesiada, KJ Purzycka, M Szachniuk, J Blazewicz, RW Adamiak
RNA Structure Determination, 199-215, 2016
422016
RNApdbee 2.0: multifunctional tool for RNA structure annotation
T Zok, M Antczak, M Zurkowski, M Popenda, J Blazewicz, RW Adamiak, ...
Nucleic acids research 46 (W1), W30-W35, 2018
372018
RNA tertiary structure determination: NOE pathways construction by tabu search
J Blazewicz, M Szachniuk, A Wojtowicz
Bioinformatics 21 (10), 2356-2361, 2005
282005
Automated 3D RNA structure prediction using the RNAComposer method for riboswitches
RWA K.J. Purzycka, M. Popenda, M. Szachniuk, M. Antczak, P. Lukasiak, J ...
Methods in Enzymology 553, 3-34, 2014
26*2014
MCQ4Structures to compute similarity of molecule structures
T Zok, M Popenda, M Szachniuk
Central European Journal of Operations Research 22 (3), 457-473, 2014
252014
Sorting signal targeting mRNA into hepatic extracellular vesicles
N Szostak, F Royo, A Rybarczyk, M Szachniuk, J Blazewicz, A del Sol, ...
RNA biology 11 (7), 836-844, 2014
242014
RNAlyzer—novel approach for quality analysis of RNA structural models
P Lukasiak, M Antczak, T Ratajczak, JM Bujnicki, M Szachniuk, ...
Nucleic acids research 41 (12), 5978-5990, 2013
242013
New in silico approach to assessing RNA secondary structures with non-canonical base pairs
A Rybarczyk, N Szostak, M Antczak, T Zok, M Popenda, R Adamiak, ...
BMC bioinformatics 16 (1), 1-12, 2015
222015
An algorithm for an automatic NOE pathways analysis of 2D NMR spectra of RNA duplexes
RW Adamiak, J Blazewicz, P Formanowicz, Z Gdaniec, M Kasprzak, ...
Journal of Computational Biology 11 (1), 163-179, 2004
212004
The orderly colored longest path problem–a survey of applications and new algorithms
M Szachniuk, MC De Cola, G Felici, J Blazewicz
RAIRO-Operations Research 48 (1), 25-51, 2014
202014
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers
Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ...
RNA 26 (8), 982-995, 2020
192020
RNAssess - a webserver for quality assessment of RNA 3D structures
P Lukasiak, M Antczak, T Ratajczak, M Szachniuk, M Popenda, ...
Nucleic Acids Research, 2015
192015
Bioinformatics study of structural patterns in plant MicroRNA precursors
J Miskiewicz, K Tomczyk, A Mickiewicz, J Sarzynska, M Szachniuk
BioMed research international 2017, 2017
162017
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Articles 1–20