| SAINT: Self-Attention Augmented Inception-Inside-Inception Network Improves Protein Secondary Structure Prediction MR Uddin, S Mahbub, MS Rahman, MS Bayzid Bioinformatics, 2020 | 70 | 2020 |
| Immune landscape in invasive ductal and lobular breast cancer reveals a divergent macrophage-driven microenvironment S Onkar, J Cui, J Zou, C Cardello, AR Cillo, MR Uddin, A Sagan, M Joy, ... Nature cancer 4 (4), 516-534, 2023 | 40 | 2023 |
| Harmony: A Generic Unsupervised Approach for Disentangling Semantic Content from Parameterized Transformations MR Uddin, G Howe, X Zeng, M Xu IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2022 | 8 | 2022 |
| Computational methods toward unbiased pattern mining and structure determination in cryo-electron tomography data HHS Kim, MR Uddin, M Xu, YW Chang Journal of molecular biology 435 (9), 168068, 2023 | 7 | 2023 |
| Cryo-shift: Reducing domain shift in cryo-electron subtomograms with unsupervised domain adaptation and randomization H Bandyopadhyay, Z Deng, L Ding, S Liu, MR Uddin, X Zeng, S Behpour, ... Bioinformatics, 2021 | 6 | 2021 |
| Self-supervised learning for macromolecular structure classification based on cryo-electron tomograms T Gupta, X He, MR Uddin, X Zeng, A Zhou, J Zhang, Z Freyberg, M Xu Frontiers in Physiology 13, 957484, 2022 | 4 | 2022 |
| DUAL: deep unsupervised simultaneous simulation and denoising for cryo-electron tomography X Zeng, Y Ding, Y Zhang, MR Uddin, A Dabouei, M Xu bioRxiv, 2024 | 3 | 2024 |
| Unsupervised multi-task learning for 3D subtomogram image alignment, Clustering and Segmentation H Zhu, C Wang, Y Wang, Z Fan, MR Uddin, X Gao, J Zhang, X Zeng, M Xu 2022 IEEE International Conference on Image Processing (ICIP), 2751-2755, 2022 | 3 | 2022 |
| Deep active learning for cryo-electron tomography classification T Wang, B Li, J Zhang, X Zeng, MR Uddin, W Wu, M Xu 2022 IEEE International Conference on Image Processing (ICIP), 1611-1615, 2022 | 3 | 2022 |
| Cryosam: Training-free cryoet tomogram segmentation with foundation models Y Zhao, H Bian, M Mu, MR Uddin, Z Li, X Li, T Wang, M Xu International Conference on Medical Image Computing and Computer-Assisted …, 2024 | 2 | 2024 |
| Practical analysis of macromolecule identity from cryo-electron tomography images using deep learning MR Uddin, AY Ahmed, K Khan, MS Fatemi, X Zeng, M Xu 2021 IEEE applied imagery pattern recognition workshop (AIPR), 1-9, 2021 | 2 | 2021 |
| TomoPicker: annotation-efficient particle picking in cryo-electron tomograms MR Uddin, AY Ahmed, MT Tahmid, MZU Alam, Z Freyberg, M Xu bioRxiv, 2024 | 1 | 2024 |
| Improving knowledge distillation in transfer learning with layer-wise learning rates S Kokane, MR Uddin, M Xu arXiv preprint arXiv:2407.04871, 2024 | 1 | 2024 |
| Detecting anomalies from liquid transfer videos in automated laboratory setting NH Sarker, ZA Hakim, A Dabouei, MR Uddin, Z Freyberg, A MacWilliams, ... Frontiers in Molecular Biosciences 10, 1147514, 2023 | 1 | 2023 |
| Immune landscape in invasive ductal and lobular breast cancer reveals a divergent macrophage-driven microenvironment (Mar, 10.1038/s43018-023-00527-w, 2023) S Onkar, J Cui, J Zou, C Cardello, AR Cillo, MR Uddin, A Sagan, M Joy, ... NATURE CANCER 4 (4), 582-582, 2023 | 1 | 2023 |
| Structure detection in three-dimensional cellular cryoelectron tomograms by reconstructing two-dimensional annotated tilt series X Zeng, Z Lin, MR Uddin, B Zhou, C Cheng, J Zhang, Z Freyberg, M Xu Journal of Computational Biology 29 (8), 932-941, 2022 | 1 | 2022 |
| Towards molecular structure discovery from cryo-ET density volumes via modelling auxiliary semantic prototypes A Nair, X Li, B Solanki, S Mukhopadhyay, A Jha, M Rafid Uddin, M Singha, ... Briefings in Bioinformatics 26 (1), bbae570, 2025 | | 2025 |
| Training-free CryoET Tomogram Segmentation Y Zhao, H Bian, M Mu, MR Uddin, Z Li, X Li, T Wang, M Xu ArXiv, arXiv: 2407.06833 v1, 2024 | | 2024 |
| DualContrast: Unsupervised Disentangling of Content and Transformations with Implicit Parameterization MR Uddin, M Xu arXiv preprint arXiv:2405.16796, 2024 | | 2024 |
| Supplementary of Harmony: A Generic Unsupervised Approach for Disentangling Semantic Content from Parameterized Transformations MR Uddin, G Howe, X Zeng, M Xu | | |
Min XuCarnegie Mellon UniversityVerified email at cs.cmu.edu
