Guillaume Jospin
Guillaume Jospin
bioinformatician at AnimalBiome
Verified email at animalbiome.com
Title
Cited by
Cited by
Year
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
D Coil, G Jospin, AE Darling
Bioinformatics 31 (4), 587-589, 2015
8002015
PhyloSift: phylogenetic analysis of genomes and metagenomes
AE Darling, G Jospin, E Lowe, FA Matsen IV, HM Bik, JA Eisen
PeerJ 2, e243, 2014
5192014
Systematic identification of gene families for use as “markers” for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups
D Wu, G Jospin, JA Eisen
PloS one 8 (10), e77033, 2013
1682013
Global marine bacterial diversity peaks at high latitudes in winter
J Ladau, TJ Sharpton, MM Finucane, G Jospin, SW Kembel, J O'dwyer, ...
The ISME journal 7 (9), 1669-1677, 2013
1612013
Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota
A Van Deynze, P Zamora, PM Delaux, C Heitmann, D Jayaraman, ...
PLoS biology 16 (8), e2006352, 2018
1572018
Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation
PM Rosado, DCA Leite, GAS Duarte, RM Chaloub, G Jospin, ...
The ISME journal 13 (4), 921-936, 2019
1332019
PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2: e243
AE Darling, G Jospin, E Lowe, FA Matsen, HM Bik, JA Eisen
932014
Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia
LMO Loohuis, S Mangul, APS Ori, G Jospin, D Koslicki, HT Yang, T Wu, ...
Translational psychiatry 8 (1), 1-9, 2018
66*2018
The bacterial communities of Drosophila suzukii collected from undamaged cherries
JA Chandler, PM James, G Jospin, JM Lang
PeerJ 2, e474, 2014
622014
Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia
LGE Wilkins, CL Ettinger, G Jospin, JA Eisen
Scientific reports 9 (1), 1-15, 2019
432019
Recent outbreaks of shigellosis in California caused by two distinct populations of Shigella sonnei with either increased virulence or fluoroquinolone resistance
VK Kozyreva, G Jospin, AL Greninger, JP Watt, JA Eisen, V Chaturvedi
Msphere 1 (6), e00344-16, 2016
342016
Swabs to genomes: a comprehensive workflow
MI Dunitz, JM Lang, G Jospin, AE Darling, JA Eisen, DA Coil
PeerJ 3, e960, 2015
332015
Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon
S Tokajian, JA Eisen, G Jospin, A Farra, DA Coil
Frontiers in cellular and infection microbiology 5, 32, 2015
312015
Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource
TJ Sharpton, G Jospin, D Wu, MGI Langille, KS Pollard, JA Eisen
BMC bioinformatics 13 (1), 1-12, 2012
262012
Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource
TJ Sharpton, G Jospin, D Wu, MGI Langille, KS Pollard, JA Eisen
BMC bioinformatics 13 (1), 1-12, 2012
262012
Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections
J Ibrahim, JA Eisen, G Jospin, DA Coil, G Khazen, S Tokajian
PLoS One 11 (12), e0168177, 2016
232016
4th, Bik HM, Eisen JA
AE Darling, G Jospin, E Lowe, FA Matsen
PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2, e243, 2014
202014
A phylogenetically novel cyanobacterium most closely related to Gloeobacter
CL Grettenberger, DY Sumner, K Wall, CT Brown, JA Eisen, TJ Mackey, ...
The ISME journal 14 (8), 2142-2152, 2020
122020
Draft Genome Sequences of 26 Porphyromonas Strains Isolated from the Canine Oral Microbiome
DA Coil, A Alexiev, C Wallis, C O’Flynn, O Deusch, I Davis, A Horsfall, ...
Genome announcements 3 (2), e00187-15, 2015
102015
Microbial community succession and nutrient cycling responses following perturbations of experimental saltwater aquaria
HM Bik, A Alexiev, SK Aulakh, L Bharadwaj, J Flanagan, JM Haggerty, ...
MSphere 4 (1), e00043-19, 2019
82019
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Articles 1–20