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Suleyman Vural
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Classification of breast cancer patients using somatic mutation profiles and machine learning approaches
S Vural, X Wang, C Guda
BMC systems biology 10, 263-276, 2016
802016
ngLOC: software and web server for predicting protein subcellular localization in prokaryotes and eukaryotes
BR King, S Vural, S Pandey, A Barteau, C Guda
BMC research notes 5, 1-7, 2012
502012
Epigenome-wide DNA methylation analysis of small cell lung cancer cell lines suggests potential chemotherapy targets
J Krushkal, T Silvers, WC Reinhold, D Sonkin, S Vural, J Connelly, ...
Clinical epigenetics 12, 1-28, 2020
492020
Mining for class-specific motifs in protein sequence classification
SM Srinivasan, S Vural, BR King, C Guda
BMC bioinformatics 14, 1-14, 2013
282013
Exome analysis reveals differentially mutated gene signatures of stage, grade and subtype in breast cancers
Y Li, X Wang, S Vural, NK Mishra, KH Cowan, C Guda
PLoS One 10 (3), e0119383, 2015
262015
Association of transcriptional levels of folate-mediated one-carbon metabolism-related genes in cancer cell lines with drug treatment response
DJ Min, S Vural, J Krushkal
Cancer Genetics 237, 19-38, 2019
172019
Correlation of gene expression and associated mutation profiles of APOBEC3A, APOBEC3B, REV1, UNG, and FHIT with chemosensitivity of cancer cell lines to …
S Vural, R Simon, J Krushkal
Human Genomics 12, 1-21, 2018
172018
Association of expression of epigenetic molecular factors with DNA methylation and sensitivity to chemotherapeutic agents in cancer cell lines
S Vural, A Palmisano, WC Reinhold, Y Pommier, BA Teicher, J Krushkal
Clinical Epigenetics 13, 1-23, 2021
162021
Neuroendocrine negative SCLC is mostly RB1 WT and may be sensitive to CDK4/6 inhibition
D Sonkin, S Vural, A Thomas, BA Teicher
BioRxiv, 516351, 2019
142019
MutSpliceDB: A database of splice sites variants with RNA‐seq based evidence on effects on splicing
A Palmisano, S Vural, Y Zhao, D Sonkin
Human mutation 42 (4), 342-345, 2021
112021
Detection of homozygous deletions in tumor‐suppressor genes ranging from dozen to hundreds nucleotides in cancer models
LC Chang, S Vural, D Sonkin
Human Mutation 38 (11), 1449-1453, 2017
92017
HCMMCNVs: hierarchical clustering mixture model of copy number variants detection using whole exome sequencing technology
C Song, SC Su, Z Huo, S Vural, JE Galvin, LC Chang
Bioinformatics 37 (18), 3026-3028, 2021
12021
Analysis of APOBEC3A and APOBEC3B mutational signatures using next-generation sequencing data from cancer cell lines
S Vural, J Krushkal, R Simon
Cancer Research 77 (13_Supplement), 2590-2590, 2017
12017
Increased copy number of imprinted genes in the chromosomal region 20q11-q13. 32 is associated with resistance to antitumor agents in cancer cell lines
J Krushkal, S Vural, TL Jensen, G Wright, Y Zhao
Clinical Epigenetics 14 (1), 161, 2022
2022
TP53 isoform junction reads based analysis in malignant and normal contexts
S Vural, LC Chang, LM Yee, D Sonkin
Scientific Reports 11 (1), 17275, 2021
2021
Associations of epigenome-wide DNA methylation patterns with chemosensitivity and chemoresistance of small cell lung cancer cell lines
J Krushkal, T Silvers, D Sonkin, S Vural, J Connelly, S Varma, PS Meltzer, ...
MOLECULAR CANCER THERAPEUTICS 18 (12), 2019
2019
Abstract B013: Associations of epigenome-wide DNA methylation patterns with chemosensitivity and chemoresistance of small cell lung cancer cell lines
J Krushkal, T Silvers, D Sonkin, S Vural, J Connelly, S Varma, PS Meltzer, ...
Molecular Cancer Therapeutics 18 (12_Supplement), B013-B013, 2019
2019
MutSpliceDB: A database of splice sites mutations effects
A Palmisano, S Vural, Y Zhao, D Sonkin
Cancer Research 79 (13_Supplement), 2480-2480, 2019
2019
A survey of molecular factors of DNA methylation and demethylation in a broad range of cancer cell lines
S Vural, J Krushkal
Cancer Research 79 (13_Supplement), 2479-2479, 2019
2019
Association of transcriptional levels of folate-mediated one-carbon metabolism related genes in cancer cell lines with drug treatment response
J Krushkal, S Vural, DJ Min
Cancer Research 79 (13_Supplement), 4246-4246, 2019
2019
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Articles 1–20