Arlindo L Oliveira
Arlindo L Oliveira
Professor of Computer Science and Engineering, Instituto Superior Técnico / INESC-ID
Verified email at tecnico.ulisboa.pt - Homepage
Title
Cited by
Cited by
Year
Biclustering algorithms for biological data analysis: a survey
SC Madeira, AL Oliveira
IEEE/ACM transactions on computational biology and bioinformatics 1 (1), 24-45, 2004
23242004
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
MC Teixeira, P Monteiro, P Jain, S Tenreiro, AR Fernandes, NP Mira, ...
Nucleic acids research 34 (suppl_1), D446-D451, 2006
5562006
Temporal Data Mining: an Overview
C Antunes, AL Oliveira
Proceedings of KDD Workshop on Temporal Data Mining, 1-13, 2001
427*2001
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ...
Nucleic acids research, gkt1015, 2014
2522014
Identifying the best machine learning algorithms for brain tumor segmentation, progression assessment, and overall survival prediction in the BRATS challenge
S Bakas, M Reyes, A Jakab, S Bauer, M Rempfler, A Crimi, RT Shinohara, ...
arXiv preprint arXiv:1811.02629, 2018
2332018
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenco, ...
Nucleic acids research 39 (suppl_1), D136-D140, 2010
2082010
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
PT Monteiro, ND Mendes, MC Teixeira, S d’Orey, S Tenreiro, NP Mira, ...
Nucleic acids research 36 (suppl_1), D132-D136, 2007
1792007
Techniques for the creation of digital watermarks in sequential circuit designs
AL Oliveira
IEEE Transactions on Computer-Aided Design of Integrated Circuits and …, 2001
1462001
Identification of regulatory modules in time series gene expression data using a linear time biclustering algorithm
SC Madeira, MC Teixeira, I Sa-Correia, AL Oliveira
IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (1), 153-165, 2008
1112008
Generalization of pattern-growth methods for sequential pattern mining with gap constraints
C Antunes, AL Oliveira
International Workshop on Machine Learning and Data Mining in Pattern …, 2003
1102003
Finite state machine decomposition for low power
JC Monteiro, AL Oliveira
Proceedings of the 35th annual Design Automation Conference, 758-763, 1998
1011998
An empirical comparison of text categorization methods
A Cardoso-Cachopo, AL Oliveira
International Symposium on String Processing and Information Retrieval, 183-196, 2003
992003
Robust techniques for watermarking sequential circuit designs
AL Oliveira
Proceedings 1999 Design Automation Conference (Cat. No. 99CH36361), 837-842, 1999
831999
Prime implicant computation using satisfiability algorithms
VM Manquinho, PF Flores, JPM Silva, AL Oliveira
Proceedings Ninth IEEE International Conference on Tools with Artificial …, 1997
721997
BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data
JP Gonçalves, SC Madeira, AL Oliveira
BMC research notes 2 (1), 1-11, 2009
682009
An efficient algorithm for the identification of structured motifs in DNA promoter sequences
AM Carvalho, AT Freitas, AL Oliveira, MF Sagot
IEEE/ACM Transactions on computational biology and bioinformatics 3 (2), 126-140, 2006
672006
Fully compressed suffix trees
LMS Russo, G Navarro, AL Oliveira
ACM transactions on algorithms (TALG) 7 (4), 1-34, 2011
662011
A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series
SC Madeira, AL Oliveira
Algorithms for Molecular Biology 4 (1), 8, 2009
662009
A linear time biclustering algorithm for time series gene expression data
SC Madeira, AL Oliveira
International Workshop on Algorithms in Bioinformatics, 39-52, 2005
662005
A highly scalable algorithm for the extraction of cis-regulatory regions
AM Carvalho, AT Freitas, AL Oliveira, MF Sagot
Proceedings Of The 3rd Asia-Pacific Bioinformatics Conference, 273-282, 2005
582005
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