Alper Kucukural
Title
Cited by
Cited by
Year
I-TASSER: a unified platform for automated protein structure and function prediction
A Roy, A Kucukural, Y Zhang
Nature protocols 5 (4), 725-738, 2010
56472010
Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals
U Sharma, CC Conine, JM Shea, A Boskovic, AG Derr, XY Bing, ...
Science 351 (6271), 391-396, 2016
7272016
Identification of Neuronal RNA Targets of TDP-43-containing Ribonucleoprotein Complexes*♦
CF Sephton, C Cenik, A Kucukural, EB Dammer, B Cenik, YH Han, ...
Journal of biological chemistry 286 (2), 1204-1215, 2011
4062011
The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus
G Singh, A Kucukural, C Cenik, JD Leszyk, SA Shaffer, Z Weng, MJ Moore
Cell 151 (4), 750-764, 2012
2882012
Novel observations from next-generation RNA sequencing of highly purified human adult and fetal islet cell subsets
DM Blodgett, A Nowosielska, S Afik, S Pechhold, AJ Cura, NJ Kennedy, ...
Diabetes 64 (9), 3172-3181, 2015
2232015
Simultaneous generation of many RNA-seq libraries in a single reaction
AA Shishkin, G Giannoukos, A Kucukural, D Ciulla, M Busby, C Surka, ...
Nature methods 12 (4), 323-325, 2015
1772015
Ebola virus glycoprotein with increased infectivity dominated the 2013–2016 epidemic
WE Diehl, AE Lin, ND Grubaugh, LM Carvalho, K Kim, PP Kyawe, ...
Cell 167 (4), 1088-1098. e6, 2016
1572016
Staufen1 senses overall transcript secondary structure to regulate translation
EP Ricci, A Kucukural, C Cenik, BC Mercier, G Singh, EE Heyer, ...
Nature structural & molecular biology 21 (1), 26-35, 2014
1192014
Genetic and epigenetic variation, but not diet, shape the sperm methylome
JM Shea, RW Serra, BR Carone, HP Shulha, A Kucukural, MJ Ziller, ...
Developmental cell 35 (6), 750-758, 2015
1152015
DEBrowser: interactive differential expression analysis and visualization tool for count data
A Kucukural, O Yukselen, DM Ozata, MJ Moore, M Garber
BMC genomics 20 (1), 1-12, 2019
852019
Diverse repertoire of human adipocyte subtypes develops from transcriptionally distinct mesenchymal progenitor cells
SY Min, A Desai, Z Yang, A Sharma, T DeSouza, RMJ Genga, ...
Proceedings of the National Academy of Sciences 116 (36), 17970-17979, 2019
412019
ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq
A Kucukural, H Özadam, G Singh, MJ Moore, C Cenik
Bioinformatics 29 (19), 2485-2486, 2013
402013
HLA class II antigen processing and presentation pathway components demonstrated by transcriptome and protein analyses of islet β-cells from donors with type 1 diabetes
MA Russell, SD Redick, DM Blodgett, SJ Richardson, P Leete, L Krogvold, ...
Diabetes 68 (5), 988-1001, 2019
372019
Chemoinformatics and Advanced Machine Learning Perspectives: Complex Computational Methods and Collaborative Techniques: Complex Computational Methods and Collaborative Techniques
H Lodhi, Y Yamanishi
IGI Global, 2010
342010
GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases
LJ Zhu, M Lawrence, A Gupta, H Pagès, A Kucukural, M Garber, SA Wolfe
BMC genomics 18 (1), 1-10, 2017
312017
Generation and analysis of expressed sequence tags from Olea europaea L.
N Ozdemir Ozgenturk, F Oruç, U Sezerman, A Kuçukural, S Vural Korkut, ...
Comparative and functional genomics 2010, 2010
292010
HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells
Y Wang, L Lifshitz, K Gellatly, CL Vinton, K Busman-Sahay, S McCauley, ...
Nature immunology 21 (3), 274-286, 2020
202020
Evolutionarily conserved pachytene piRNA loci are highly divergent among modern humans
DM Özata, T Yu, H Mou, I Gainetdinov, C Colpan, K Cecchini, Y Kaymaz, ...
Nature ecology & evolution 4 (1), 156-168, 2020
172020
Comparison of RNA isolation and associated methods for extracellular RNA detection by high-throughput quantitative polymerase chain reaction
K Tanriverdi, A Kucukural, E Mikhalev, SE Tanriverdi, R Lee, VR Ambros, ...
Analytical biochemistry 501, 66-74, 2016
172016
Evolutionary selection of minimum number of features for classification of gene expression data using genetic algorithms
A Küçükural, R Yeniterzi, S Yeniterzi, OU Sezerman
Proceedings of the 9th annual conference on Genetic and evolutionary …, 2007
172007
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Articles 1–20