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Ambuj Srivastava, PhD
Ambuj Srivastava, PhD
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
COVID-19 outbreak: history, mechanism, transmission, structural studies and therapeutics
D Yesudhas, A Srivastava, MM Gromiha
Infection 49, 199-213, 2021
3312021
ProNAB: database for binding affinities of protein–nucleic acid complexes and their mutants
K Harini, A Srivastava, A Kulandaisamy, MM Gromiha
Nucleic acids research 50 (D1), D1528-D1534, 2022
212022
In silico analysis of 5′-UTRs highlights the prevalence of Shine–Dalgarno and leaderless-dependent mechanisms of translation initiation in bacteria and archaea, respectively
A Srivastava, P Gogoi, B Deka, S Goswami, SP Kanaujia
Journal of Theoretical Biology 402, 54-61, 2016
212016
Deciphering RNA-recognition patterns of intrinsically disordered proteins
A Srivastava, S Ahmad, MM Gromiha
International journal of molecular sciences 19 (6), 1595, 2018
202018
Exploring antibody repurposing for COVID-19: beyond presumed roles of therapeutic antibodies
P Rawat, D Sharma, A Srivastava, V Janakiraman, MM Gromiha
Scientific reports 11 (1), 10220, 2021
142021
Insights using the molecular model of Lipoxygenase from Finger millet (Eleusine coracana (L.))
A Tiwari, H Avashthi, R Jha, A Srivastava, VK Garg, PW Ramteke, ...
Bioinformation 12 (3), 156, 2016
142016
Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers
S Shome, RG Parra, N Fatima, AM Monzon, B Cuypers, Y Moosa, ...
F1000Research 8, 2019
112019
In silico identification of MAPK3/6 substrates in WRKY, bZIP, MYB, MYB-related, NAC and AP-2 transcription factor family in Arabidopsis thaliana
H Avashthi, B Gautam, PA Jain, A Tiwari, RK Pathak, A Srivastava, G Taj, ...
Int J Comput Bioinfo In Silico Model 3, 454-459, 2014
112014
Tackling Covid‐19 using disordered‐to‐order transition of residues in the spike protein upon angiotensin‐converting enzyme 2 binding
D Yesudhas, A Srivastava, M Sekijima, MM Gromiha
Proteins: Structure, Function, and Bioinformatics 89 (9), 1158-1166, 2021
102021
Dissecting and analyzing key residues in protein‐DNA complexes
A Kulandaisamy, A Srivastava, R Nagarajan, MM Gromiha
Journal of Molecular Recognition 31 (4), e2692, 2018
92018
Heterogeneous behavior of metalloproteins toward metal ion binding and selectivity: insights from molecular dynamics studies
P Gogoi, M Chandravanshi, SK Mandal, A Srivastava, SP Kanaujia
Journal of Biomolecular Structure and Dynamics 34 (7), 1470-1485, 2016
92016
Selectivity and ranking of tight-binding JAK-STAT inhibitors using Markovian milestoning with Voronoi tessellations
AA Ojha, A Srivastava, LW Votapka, RE Amaro
Journal of Chemical Information and Modeling 63 (8), 2469-2482, 2023
72023
In silico analysis suggests that PH0702 and PH0208 encode for methylthioribose-1-phosphate isomerase and ribose-1, 5-bisphosphate isomerase, respectively, rather than aIF2Bβ …
P Gogoi, A Srivastava, P Jayaprakash, J Jeyakanthan, SP Kanaujia
Gene 575 (1), 118-126, 2016
72016
Role of disordered regions in transferring tyrosine to its cognate tRNA
A Srivastava, D Yesudhas, C Ramakrishnan, S Ahmad, MM Gromiha
International journal of biological macromolecules 150, 705-713, 2020
42020
Protein interactions: Computational methods, analysis and applications
MM Gromiha
World Scientific, 2020
42020
Identification and analysis of key residues in protein–RNA complexes
A Kulandaisamy, A Srivastava, P Kumar, R Nagarajan, SB Priya, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics 15 (5 …, 2018
42018
Understanding disorder-to-order transitions in protein–RNA complexes using molecular dynamics simulations
A Srivastava, D Yesudhas, S Ahmad, MM Gromiha
Journal of Biomolecular Structure and Dynamics 40 (17), 7915-7925, 2022
22022
Cavity/Binding Site Prediction Approaches and Their Applications
H Avashthi, A Srivastava, DB Singh
Computer-Aided Drug Design, 49-69, 2020
12020
Deciphering the Role of Residues Involved in Disorder-To-Order Transition Regions in Archaeal tRNA Methyltransferase 5
A Srivastava, D Yesudhas, S Ahmad, MM Gromiha
Genes 12 (3), 399, 2021
2021
Prediction of nucleic acid binding proteins and their binding sites
D Yesudhas, A Srivastava, N Muralidharan, A Kulandaisamy, ...
PROTEIN INTERACTIONS: Computational Methods, Analysis and Applications, 217-242, 2020
2020
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