| SMGR: a joint statistical method for integrative analysis of single-cell multi-omics data Q Song, X Zhu, L Jin, M Chen, W Zhang, J Su NAR genomics and bioinformatics 4 (3), lqac056, 2022 | 29 | 2022 |
| Stochastic modeling and simulation of reaction-diffusion system with Hill function dynamics M Chen, F Li, S Wang, Y Cao Proceedings of the 7th ACM international conference on bioinformatics …, 2016 | 13 | 2016 |
| A stochastic spatiotemporal model of a response-regulator network in the Caulobacter crescentus cell cycle F Li, K Subramanian, M Chen, JJ Tyson, Y Cao Physical biology 13 (3), 035007, 2016 | 13 | 2016 |
| A hybrid stochastic model of the budding yeast cell cycle control mechanism S Wang, M Ahmadian, M Chen, J Tyson, Y Cao Proceedings of the 7th ACM International Conference on Bioinformatics …, 2016 | 12 | 2016 |
| A network-guided reaction-diffusion model of AT [N] biomarkers in Alzheimer’s disease J Zhang, D Yang, W He, G Wu, M Chen 2020 IEEE 20th International Conference on Bioinformatics and Bioengineering …, 2020 | 10 | 2020 |
| Quasi-Newton stochastic optimization algorithm for parameter estimation of a stochastic model of the budding yeast cell cycle M Chen, BD Amos, LT Watson, JJ Tyson, Y Cao, CA Shaffer, MW Trosset, ... IEEE/ACM transactions on computational biology and bioinformatics 16 (1 …, 2017 | 10 | 2017 |
| Graph clustering analyses of discontinuous molecular dynamics simulations: study of lysozyme adsorption on a graphene surface J Chen, E Xu, Y Wei, M Chen, T Wei, S Zheng Langmuir 38 (35), 10817-10825, 2022 | 9 | 2022 |
| Regional brain fusion: Graph convolutional network for alzheimer's disease prediction and analysis W Li, J Zhao, C Shen, J Zhang, J Hu, M Xiao, J Zhang, M Chen Frontiers in neuroinformatics 16, 886365, 2022 | 9 | 2022 |
| Analysis and remedy of negativity problem in hybrid stochastic simulation algorithm and its application M Chen, Y Cao Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018 | 8 | 2018 |
| Two-dimensional model of bipolar PopZ polymerization in caulobacter crescentus M Chen, F Li, K Subramanian, J Tyson, Y Cao Proceedings of the 6th ACM Conference on Bioinformatics, Computational …, 2015 | 8 | 2015 |
| Efficient implementation of the hybrid method for stochastic simulation of biochemical systems S Wang, Y Cao Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012 | 8 | 2012 |
| Accuracy analysis of hybrid stochastic simulation algorithm on linear chain reaction systems M Chen, S Wang, Y Cao Bulletin of mathematical biology 81, 3024-3052, 2019 | 6 | 2019 |
| Dual-Stream Subspace Clustering Network for revealing gene targets in Alzheimer's disease M Chen, S Jia, M Xue, H Huang, Z Xu, D Yang, W Zhu, Q Song Computers in Biology and Medicine 151, 106305, 2022 | 5 | 2022 |
| Time-varying sequence model S Jadhav, J Zhao, Y Fan, J Li, H Lin, C Yan, M Chen Mathematics 11 (2), 336, 2023 | 4 | 2023 |
| Patient similarity learning with selective forgetting W Qian, C Zhao, H Shao, M Chen, F Wang, M Huai 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022 | 4 | 2022 |
| Analyzing the spatiotemporal interaction and propagation of ATN biomarkers in Alzheimer’s disease using longitudinal neuroimaging data Q Liu, D Yang, J Zhang, Z Wei, G Wu, M Chen 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 126-129, 2021 | 4 | 2021 |
| Parameter estimation of stochastic models based on limited data M Chen, Y Cao, LT Watson ACM SIGBioinformatics Record 7 (3), 1-3, 2018 | 4 | 2018 |
| Characterizing network selectiveness to the dynamic spreading of neuropathological events in Alzheimer’s disease W Li, D Yang, C Yan, M Chen, Q Li, W Zhu, G Wu, ... Journal of Alzheimer's Disease 86 (4), 1805-1816, 2022 | 3 | 2022 |
| Reaction time for trimolecular reactions in compartment-based reaction-diffusion models F Li, M Chen, R Erban, Y Cao The Journal of chemical physics 148 (20), 2018 | 3 | 2018 |
| A neuropathological hub identification for Alzheimer’s disease via joint analysis of topological structure and neuropathological burden D Yang, W Li, J Zhang, H Shen, M Chen, W Zhu, G Wu 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), 1-4, 2022 | 2 | 2022 |
Yang CaoComputer Science Department, Virginia techVerified email at cs.vt.edu
