| Multiplexed droplet single-cell RNA-sequencing using natural genetic variation HM Kang, M Subramaniam, S Targ, M Nguyen, L Maliskova, E McCarthy, ... Nature biotechnology 36 (1), 89, 2018 | 807 | 2018 |
| Generation of knock-in primary human T cells using Cas9 ribonucleoproteins K Schumann, S Lin, E Boyer, DR Simeonov, M Subramaniam, RE Gate, ... Proceedings of the National Academy of Sciences 112 (33), 10437-10442, 2015 | 803 | 2015 |
| Discovery of stimulation-responsive immune enhancers with CRISPR activation DR Simeonov, BG Gowen, M Boontanrart, TL Roth, JD Gagnon, ... Nature 549 (7670), 111, 2017 | 285 | 2017 |
| The landscape of genomic imprinting across diverse adult human tissues Y Baran, M Subramaniam, A Biton, T Tukiainen, EK Tsang, MA Rivas, ... Genome research 25 (7), 927-936, 2015 | 239 | 2015 |
| Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus RK Perez, MG Gordon, M Subramaniam, MC Kim, GC Hartoularos, S Targ, ... Science 376 (6589), eabf1970, 2022 | 186 | 2022 |
| Functional Interpretation of Single-Cell Similarity Maps D DeTomaso, M Jones, M Subramaniam, T Ashuach, JY Chun, N Yosef bioRxiv, 403055, 2018 | 183 | 2018 |
| Genetic determinants of co-accessible chromatin regions in activated T cells across humans RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ... Nature genetics 50 (8), 1140, 2018 | 166 | 2018 |
| Lineage dynamics of murine pancreatic development at single-cell resolution LE Byrnes, DM Wong, M Subramaniam, NP Meyer, CL Gilchrist, SM Knox, ... Nature communications 9 (1), 3922, 2018 | 151 | 2018 |
| Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting D Mavor, K Barlow, S Thompson, BA Barad, AR Bonny, CL Cario, ... Elife 5, e15802, 2016 | 78 | 2016 |
| Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection CJ Ye, J Chen, AC Villani, RE Gate, M Subramaniam, T Bhangale, ... Genome research 28 (12), 1812-1825, 2018 | 64 | 2018 |
| Genetic and environmental perturbations lead to regulatory decoherence A Lea, M Subramaniam, A Ko, T Lehtimäki, E Raitoharju, M Kähönen, ... eLife 8, e40538, 2019 | 45 | 2019 |
| Anti-GD2 CAR-NKT cells in relapsed or refractory neuroblastoma: updated phase 1 trial interim results A Heczey, X Xu, AN Courtney, G Tian, GA Barragan, L Guo, CM Amador, ... Nature Medicine 29 (6), 1379-1388, 2023 | 36 | 2023 |
| GBAT: a gene-based association method for robust trans-gene regulation detection X Liu, JA Mefford, A Dahl, M Subramaniam, A Battle, AL Price, N Zaitlen bioRxiv, 395970, 2018 | 12 | 2018 |
| Cloudpred: Predicting patient phenotypes from single-cell rna-seq B He, M Thomson, M Subramaniam, R Perez, CJ Ye, J Zou PACIFIC SYMPOSIUM ON BIOCOMPUTING 2022, 337-348, 2021 | 10 | 2021 |
| GBAT: a gene-based association test for robust detection of trans-gene regulation X Liu, JA Mefford, A Dahl, Y He, M Subramaniam, A Battle, AL Price, ... Genome biology 21, 1-14, 2020 | 10 | 2020 |
| Mapping gene regulatory networks of primary CD4+ T cells using single-cell genomics and genome engineering RE Gate, MC Kim, A Lu, D Lee, E Shifrut, M Subramaniam, A Marson, ... bioRxiv, 678060, 2019 | 5 | 2019 |
| Implementing and applying multiplexed single cell RNA-sequencing to reveal context-specific effects in systemic lupus erythematosus M Subramaniam UCSF, 2019 | 3 | 2019 |
| Multiplexed droplet-based sequencing using natural genetic barcodes C Ye, M Subramaniam, G Rachel, T Sasha US Patent App. 17/294,977, 2022 | | 2022 |
| Methods of treating systemic lupus erythematosus C Ye, M SUBRAMANIAM, G Rachel | | 2021 |
| Instructional tutorial for using demuxlet HM Kang, M Subramaniam, S Targ, M Nguyen, L Maliskova, E McCarthy, ... | | 2019 |
