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Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis
TS Adams, JC Schupp, S Poli, EA Ayaub, N Neumark, F Ahangari, ...
Science advances 6 (28), eaba1983, 2020
4342020
Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity
LI Jia, BP Berman, U Jariwala, X Yan, JP Cogan, A Walters, T Chen, ...
PloS one 3 (11), e3645, 2008
1722008
Polysomnographic phenotypes and their cardiovascular implications in obstructive sleep apnoea
AV Zinchuk, S Jeon, BB Koo, X Yan, DM Bravata, L Qin, BJ Selim, ...
Thorax 73 (5), 472-480, 2018
1552018
T cell-intrinsic role of IL-6 signaling in primary and memory responses
SA Nish, D Schenten, FT Wunderlich, SD Pope, Y Gao, N Hoshi, S Yu, ...
elife 3, 2014
1322014
Signaling through the adaptor molecule MyD88 in CD4+ T cells is required to overcome suppression by regulatory T cells
D Schenten, SA Nish, S Yu, X Yan, HK Lee, I Brodsky, L Pasman, B Yordy, ...
Immunity 40 (1), 78-90, 2014
1202014
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge
CA Brownstein, AH Beggs, N Homer, B Merriman, TW Yu, KC Flannery, ...
Genome biology 15 (3), 1-18, 2014
1082014
Immune dysregulation and autoreactivity correlate with disease severity in SARS-CoV-2-associated multisystem inflammatory syndrome in children
A Ramaswamy, NN Brodsky, TS Sumida, M Comi, H Asashima, ...
Immunity 54 (5), 1083-1095. e7, 2021
1032021
Validation of a 52-gene risk profile for outcome prediction in patients with idiopathic pulmonary fibrosis: an international, multicentre, cohort study
JD Herazo-Maya, J Sun, PL Molyneaux, Q Li, JA Villalba, A Tzouvelekis, ...
The Lancet Respiratory Medicine 5 (11), 857-868, 2017
932017
Transcriptional regulatory model of fibrosis progression in the human lung
JE McDonough, F Ahangari, Q Li, S Jain, SE Verleden, J Herazo-Maya, ...
JCI insight 4 (22), 2019
882019
Noninvasive analysis of the sputum transcriptome discriminates clinical phenotypes of asthma
X Yan, JH Chu, J Gomez, M Koenigs, C Holm, X He, MF Perez, H Zhao, ...
American journal of respiratory and critical care medicine 191 (10), 1116-1125, 2015
842015
Inferring activity changes of transcription factors by binding association with sorted expression profiles
C Cheng, X Yan, F Sun, LM Li
BMC bioinformatics 8 (1), 452, 2007
792007
Integrated single-cell atlas of endothelial cells of the human lung
JC Schupp, TS Adams, C Cosme Jr, MSB Raredon, Y Yuan, N Omote, ...
Circulation 144 (4), 286-302, 2021
662021
Identification and validation of differentially expressed transcripts by RNA-sequencing of formalin-fixed, paraffin-embedded (FFPE) lung tissue from patients with Idiopathic …
M Vukmirovic, JD Herazo-Maya, J Blackmon, V Skodric-Trifunovic, ...
BMC pulmonary medicine 17 (1), 1-12, 2017
532017
Characterisation of asthma subgroups associated with circulating YKL-40 levels
JL Gomez, X Yan, CT Holm, N Grant, Q Liu, L Cohn, V Nezgovorova, ...
European Respiratory Journal 50 (4), 2017
492017
Detecting differentially expressed genes by relative entropy
X Yan, M Deng, WK Fung, M Qian
Journal of theoretical biology 234 (3), 395-402, 2005
462005
Single-cell omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19
A Unterman, TS Sumida, N Nouri, X Yan, AY Zhao, V Gasque, JC Schupp, ...
medRxiv, 2020
352020
Single-cell transcriptional archetypes of airway inflammation in cystic fibrosis
JC Schupp, S Khanal, JL Gomez, M Sauler, TS Adams, GL Chupp, X Yan, ...
American journal of respiratory and critical care medicine 202 (10), 1419-1429, 2020
342020
Severe respiratory viral infection induces procalcitonin in the absence of bacterial pneumonia
S Gautam, AJ Cohen, Y Stahl, PV Toro, GM Young, R Datta, X Yan, ...
Thorax 75 (11), 974-981, 2020
332020
A network of sputum microRNAs is associated with neutrophilic airway inflammation in asthma
JL Gomez, A Chen, MP Diaz, N Zirn, A Gupta, C Britto, M Sauler, X Yan, ...
American journal of respiratory and critical care medicine 202 (1), 51-64, 2020
332020
Plasmacytoid dendritic cells, interferon signaling, and FcγR contribute to pathogenesis and therapeutic response in childhood immune thrombocytopenia
K Sehgal, X Guo, S Koduru, A Shah, A Lin, X Yan, KM Dhodapkar
Science translational medicine 5 (193), 193ra89-193ra89, 2013
312013
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