Damla Senol Cali
Damla Senol Cali
Verified email at andrew.cmu.edu
Cited by
Cited by
GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies
JS Kim, DS Cali, H Xin, D Lee, S Ghose, M Alser, H Hassan, O Ergin, ...
BMC genomics 19 (2), 23-40, 2018
Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions
D Senol Cali, JS Kim, S Ghose, C Alkan, O Mutlu
Briefings in Bioinformatics, 2018
Demystifying complex workload-DRAM interactions: An experimental study
S Ghose, T Li, N Hajinazar, DS Cali, O Mutlu
Proceedings of the ACM on Measurement and Analysis of Computing Systems 3 (3 …, 2019
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm
C Firtina, JS Kim, M Alser, D Senol Cali, AE Cicek, C Alkan, O Mutlu
Bioinformatics 36 (12), 3669-3679, 2020
GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis
DS Cali, GS Kalsi, Z Bingöl, C Firtina, L Subramanian, JS Kim, ...
arXiv preprint arXiv:2009.07692, 2020
Accelerating Genome Analysis: A Primer on an Ongoing Journey
M Alser, Z Bingöl, DS Cali, J Kim, S Ghose, C Alkan, O Mutlu
IEEE Micro 40 (5), 65-75, 2020
AirLift: A Fast and Comprehensive Technique for Translating Alignments between Reference Genomes
JS Kim, C Firtina, DS Cali, M Alser, N Hajinazar, C Alkan, O Mutlu
arXiv preprint arXiv:1912.08735, 2019
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