Damla Senol Cali
Damla Senol Cali
Verified email at andrew.cmu.edu
Title
Cited by
Cited by
Year
GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies
JS Kim, DS Cali, H Xin, D Lee, S Ghose, M Alser, H Hassan, O Ergin, ...
BMC genomics 19 (2), 89, 2018
52*2018
Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions
D Senol Cali, JS Kim, S Ghose, C Alkan, O Mutlu
Briefings in Bioinformatics, 2018
422018
Demystifying Complex Workload-DRAM Interactions: An Experimental Study
S Ghose, T Li, N Hajinazar, D Senol Cali, O Mutlu
Abstracts of the 2019 SIGMETRICS/Performance Joint International Conference …, 2019
152019
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
C Firtina, JS Kim, M Alser, DS Cali, AE Cicek, C Alkan, O Mutlu
arXiv preprint arXiv:1902.04341, 2019
32019
Understanding the Interactions of Workloads and DRAM Types: A Comprehensive Experimental Study
S Ghose, T Li, N Hajinazar, DS Cali, O Mutlu
arXiv preprint arXiv:1902.07609, 2019
22019
AirLift: A Fast and Comprehensive Technique for Translating Alignments between Reference Genomes
JS Kim, C Firtina, DS Cali, M Alser, N Hajinazar, C Alkan, O Mutlu
arXiv preprint arXiv:1912.08735, 2019
2019
Accelerating Approximate Pattern Matching with Processing-In-Memory (PIM) and Single-Instruction Multiple-Data (SIMD) Programming
DS Cali, Z Bingöl, J Kim, R Ausavarungnirun, S Ghose, C Alkan, O Mutlu
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