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Shreya Mishra
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Biclustering of gene expression microarray data using dynamic deme parallelized genetic algorithm (DdPGA)
S Mishra, S Vipsita
2017 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2017
92017
Triclustering of gene expression microarray data using evolutionary approach
S Mishra, S Vipsita
2017 14th IEEE India Council International Conference (INDICON), 1-6, 2017
32017
SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data
L Lee, H Yu, BB Jia, A Jussila, C Zhu, J Chen, L Xie, A Hafner, S Mishra, ...
Nature Communications 14 (1), 4873, 2023
22023
Quantitative and Qualitative evaluation of the recent Artificial Intelligence in Healthcare publications using Deep-Learning
R Awasthi, S Mishra, JB Cywinski, AK Khanna, K Maheshwari, FA Papay, ...
medRxiv, 2022.12. 31.22284092, 2023
22023
Associating pathways with diseases using single-cell expression profiles and making inferences about potential drugs
M Sharma, IP Jha, S Chawla, N Pandey, O Chandra, S Mishra, V Kumar
Briefings in Bioinformatics 23 (4), bbac241, 2022
22022
FITs: forest of imputation trees for recovering true signals in single-cell open chromatin profiles
R Sharma, N Pandey, A Mongia, S Mishra, A Majumdar, V Kumar
NAR Genomics and Bioinformatics 2 (4), lqaa091, 2020
22020
Identification of a distal enhancer regulating hedgehog interacting protein gene in human lung epithelial cells
F Guo, L Zhang, Y Yu, L Gong, S Tao, RB Werder, S Mishra, Y Zhou, ...
EBioMedicine 101, 2024
12024
302: QUANTITATIVE AND QUALITATIVE EVALUATION OF ARTIFICIAL INTELLIGENCE-BASED CRITICAL CARE PUBLICATIONS
P Mathur, R Awasthi, K Maheshwari, J Cywinski, V Sabharwal, F Papay, ...
Critical Care Medicine 51 (1), 137, 2023
12023
DiagnosisQA: A semi-automated pipeline for developing clinician validated diagnosis specific QA datasets
S Mishra, R Awasthi, F Papay, K Maheshawari, JB Cywinski, A Khanna, ...
medRxiv, 2021.11. 10.21266184, 2021
12021
Improving chromatin-interaction prediction using single-cell open-chromatin profiles and making insight into the cis-regulatory landscape of the human brain
N Pandey, O Chandra, S Mishra, V Kumar
Frontiers in Genetics 12, 738194, 2021
12021
Improving gene-network inference with graph-wavelets and making insights about ageing associated regulatory changes in lungs
S Mishra, D Srivastava, V Kumar
bioRxiv, 2020
12020
Nuclear morphology is shaped by loop-extrusion programs
I Patta, M Zand, L Lee, S Mishra, A Bortnick, H Lu, A Prusty, S McArdle, ...
Nature, 1-8, 2024
2024
Artificial Intelligence in Healthcare: 2023 Year in Review
R Awasthi, S Mishra, R Grasfield, J Maslinski, D Mahapatra, JB Cywinski, ...
medRxiv, 2024.02. 28.24303482, 2024
2024
HUMANELY: HUMAN EVALUATION OF LLM YIELD, USING A NOVEL WEB BASED EVALUATION TOOL
R Awasthi, S Mishra, D Mahapatra, A Khanna, K Maheshwari, J Cywinski, ...
medRxiv, 2023.12. 22.23300458, 2023
2023
An explainable model using Graph-Wavelet for predicting biophysical properties of proteins and measuring mutational effects
S Mishra, N Pandey, A Rawat, D Srivastava, A Ray, V Kumar
IEEE Access 11, 135222-135234, 2023
2023
SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data
L Lee, M Yu, X Li, C Zhu, Y Zhang, H Yu, Z Chen, S Mishra, B Ren, Y Li, ...
Briefings in Bioinformatics 24 (5), bbad315, 2023
2023
Matching queried single-cell open-chromatin profiles to large pools of single-cell transcriptomes and epigenomes for reference supported analysis
S Mishra, N Pandey, S Chawla, M Sharma, O Chandra, IP Jha, ...
Genome Research 33 (2), 218-231, 2023
2023
Deciphering the phenotypic heterogeneity and drug response in cancer cells using activity and interactions in chromatin domains
N Pandey, M Sharma, A Mathur, CG Anene-Nzel, M Hakimullah, P Patel, ...
bioRxiv, 2023.01. 15.524115, 2023
2023
Patterns of transcription factor binding and epigenome at promoters allow interpretable predictability of multiple functions of non-coding and coding genes
O Chandra, M Sharma, N Pandey, IP Jha, S Mishra, SL Kong, V Kumar
Computational and Structural Biotechnology Journal 21, 3590-3603, 2023
2023
Managing the Infodemic: Leveraging Deep Learning to Evaluate the Maturity Level of AI-Based COVID-19 Publications for Knowledge Surveillance and Decision Support
R Awasthi, A Nagori, S Mishra, A Mathur, P Mathur, B Nasri
medRxiv, 2023.06. 20.23291653, 2023
2023
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