Andrew Magee
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The dawn of open access to phylogenetic data
AF Magee, MR May, BR Moore
PLoS One 9 (10), e110268, 2014
19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology
M Fourment, AF Magee, C Whidden, A Bilge, FA Matsen IV, VN Minin
Systematic biology 69 (2), 209-220, 2020
Horseshoe‐based Bayesian nonparametric estimation of effective population size trajectories
JR Faulkner, AF Magee, B Shapiro, VN Minin
Biometrics 76 (3), 677-690, 2020
Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts
AF Magee, S Höhna, TI Vasylyeva, AD Leaché, VN Minin
PLOS Computational Biology 16 (10), e1007999, 2020
Systematic Exploration of the High Likelihood Set of Phylogenetic Tree Topologies
C Whidden, BC Claywell, T Fisher, AF Magee, M Fourment, FA Matsen IV
Systematic biology 69 (2), 280-293, 2020
Impact of K-Pg Mass Extinction Event on Crocodylomorpha Inferred from Phylogeny of Extinct and Extant Taxa
AF Magee, S Höhna
bioRxiv, 2021.01. 14.426715, 0
Robustness of phylogenetic inference to model misspecification caused by pairwise epistasis
AF Magee, SK Hilton, WS DeWitt
Molecular Biology and Evolution 38 (10), 4603-4615, 2021
How trustworthy is your tree? Bayesian phylogenetic effective sample size through the lens of Monte Carlo error
AF Magee, MD Karcher, FA Matsen IV, VN Minin
arXiv preprint arXiv:2109.07629, 2021
Reliable and interpretable inference of evolutionary history using Bayesian phylogenetic approaches
AF Magee
University of Washington, 2021
Rejoinder for discussion on “Horseshoe‐based Bayesian nonparametric estimation of effective population size trajectories”
JR Faulkner, AF Magee, B Shapiro, VN Minin
Biometrics 76 (3), 695-699, 2020
Learning, using, and extending variational distributions of phylogenetic trees
FA Matsen IV, M Karcher, M Fourment, A Magee, C Swanepoel, C Zhang
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