| Predicting the viability of beta-lactamase: How folding and binding free energies correlate with beta-lactamase fitness J Yang, N Naik, JS Patel, CS Wylie, W Gu, J Huang, FM Ytreberg, MT Naik, ... PloS one 15 (5), e0233509, 2020 | 27 | 2020 |
| LYRUS: a machine learning model for predicting the pathogenicity of missense variants J Lai, J Yang, ED Gamsiz Uzun, BM Rubenstein, IN Sarkar Bioinformatics Advances 2 (1), vbab045, 2022 | 7 | 2022 |
| Defining the HIV capsid binding site of nucleoporin 153 S Li, JS Patel, J Yang, AM Crabtree, BM Rubenstein, PK Lund-Andersen, ... Msphere 7 (5), e00310-22, 2022 | 3 | 2022 |
| Fractional Path Integral Monte Carlo M Gulian, H Yang, BM Rubenstein arXiv preprint arXiv:1709.09089, 2017 | 2 | 2017 |
| Covalent docking and molecular dynamics simulations reveal the specificity-shifting mutations Ala237Arg and Ala237Lys in TEM beta-lactamase GM Silva, J Yang, B Leang, J Huang, DM Weinreich, BM Rubenstein PLOS Computational Biology 18 (6), e1009944, 2022 | | 2022 |
| Covalent Docking and Molecular Dynamics Simulations Reveal the Resistance-Granting Mutations A237R/K in TEM Beta-Lactamase GM da Silva, J Yang, B Leang, J Huang, DM Weinreich, M Stiffler, ... Biophysical Journal 120 (3), 297a, 2021 | | 2021 |
| Simple Representation of Protein Structure and Folding Techniques J Yang Brown University, 2019 | | 2019 |
