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Pengfan Zhang
Pengfan Zhang
Innovative Genomics Institute
Verified email at berkeley.edu
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Cited by
Year
The structure and function of the global citrus rhizosphere microbiome
J Xu, Y Zhang, P Zhang, P Trivedi, N Riera, Y Wang, X Liu, G Fan, J Tang, ...
Nature communications 9 (1), 1-10, 2018
3532018
Root microbiota shift in rice correlates with resident time in the field and developmental stage
J Zhang, N Zhang, YX Liu, X Zhang, B Hu, Y Qin, H Xu, H Wang, X Guo, ...
Science China Life Sciences 61 (6), 613-621, 2018
2312018
Deciphering the composition and functional profile of the microbial communities in Chinese Moutai liquor starters
SH Gan, F Yang, SK Sahu, RY Luo, SL Liao, HY Wang, T Jin, L Wang, ...
Frontiers in microbiology 10, 1540, 2019
1142019
The distribution of tryptophan-dependent indole-3-acetic acid synthesis pathways in bacteria unraveled by large-scale genomic analysis
P Zhang, T Jin, S Kumar Sahu, J Xu, Q Shi, H Liu, Y Wang
Molecules 24 (7), 1411, 2019
1112019
An ATAC-seq atlas of chromatin accessibility in mouse tissues
C Liu, M Wang, X Wei, L Wu, J Xu, X Dai, J Xia, M Cheng, Y Yuan, ...
Scientific data 6 (1), 1-10, 2019
1032019
Host preference and invasiveness of commensal bacteria in the Lotus and Arabidopsis root microbiota
K Wippel, K Tao, Y Niu, R Zgadzaj, N Kiel, R Guan, E Dahms, P Zhang, ...
Nature microbiology 6 (9), 1150-1162, 2021
992021
Taxonomic structure and functional association of foxtail millet root microbiome
T Jin, Y Wang, Y Huang, J Xu, P Zhang, N Wang, X Liu, H Chu, G Liu, ...
Gigascience, 2017
942017
Effect of caloric restriction on BMI, gut microbiota, and blood amino acid levels in non-obese adults
H Zou, D Wang, H Ren, K Cai, P Chen, C Fang, Z Shi, P Zhang, J Wang, ...
Nutrients 12 (3), 631, 2020
452020
EasyAmplicon: An easy‐to‐use, open‐source, reproducible, and community‐based pipeline for amplicon data analysis in microbiome research
YX Liu, L Chen, T Ma, X Li, M Zheng, X Zhou, L Chen, X Qian, J Xi, H Lu, ...
iMeta 2 (1), e83, 2023
432023
Differential impact of plant secondary metabolites on the soil microbiota
V Schütz, K Frindte, J Cui, P Zhang, S Hacquard, P Schulze-Lefert, ...
Frontiers in microbiology 12, 1267, 2021
432021
Shared features and reciprocal complementation of the Chlamydomonas and Arabidopsis microbiota
P Durán, J Flores-Uribe, K Wippel, P Zhang, R Guan, B Melkonian, ...
Nature Communications 13 (1), 1-14, 2022
342022
Metagenomic Analysis Reveals Microbial Community Structure and Metabolic Potential for Nitrogen Acquisition in the Oligotrophic Surface Water of the Indian Ocean
Y Wang, S Liao, Y Gai, G Liu, T Jin, H Liu, L Gram, ML Strube, G Fan, ...
Frontiers in Microbiology 12, 229, 2021
282021
Deciphering the Microbial Taxonomy and Functionality of Two Diverse Mangrove Ecosystems and Their Potential Abilities To Produce Bioactive Compounds
S Liao, Y Wang, H Liu, G Fan, SK Sahu, T Jin, J Chen, P Zhang, L Gram, ...
Msystems 5 (5), e00851-19, 2020
222020
Cofunctioning of bacterial exometabolites drives root microbiota establishment
F Getzke, MA Hassani, M Crüsemann, M Malisic, P Zhang, Y Ishigaki, ...
Proceedings of the National Academy of Sciences 120 (15), e2221508120, 2023
212023
Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities
P Zhang, S Spaepen, Y Bai, S Hacquard, R Garrido-Oter
ISME Communications 1 (1), 1-3, 2021
92021
ER body‐resident myrosinases and tryptophan specialized metabolism modulate root microbiota assembly
AK Basak, A Piasecka, J Hucklenbroich, GM Türksoy, R Guan, P Zhang, ...
New Phytologist 241 (1), 329-342, 2024
32024
Chromosomal barcodes for simultaneous tracking of near-isogenic bacterial strains in plant microbiota
J Ordon, J Thouin, RT Nakano, KW Ma, P Zhang, B Huettel, ...
Nature Microbiology, 1-13, 2024
12024
Timing of root barriers controls soil-to-shoot integration of rhizosphere status
D Shen, K Wippel, S Remmel, P Zhang, N Kuertoes, U Neumann, ...
bioRxiv, 2023.04. 19.537470, 2023
2023
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