| Design of RNAs: comparing programs for inverse RNA folding A Churkin, MD Retwitzer, V Reinharz, Y Ponty, J Waldispühl, D Barash Briefings in bioinformatics 19 (2), 350-358, 2018 | 69 | 2018 |
| RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences A Avihoo, A Churkin, D Barash BMC bioinformatics 12, 1-8, 2011 | 48 | 2011 |
| RNAmute: RNA secondary structure mutation analysis tool A Churkin, D Barash BMC bioinformatics 7, 1-8, 2006 | 42 | 2006 |
| In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions A Aouacheria, V Navratil, R López-Pérez, NC Gutiérrez, A Churkin, ... BMC genomics 8, 1-13, 2007 | 36 | 2007 |
| Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction D Barash, A Churkin Briefings in bioinformatics 12 (2), 104-114, 2011 | 33 | 2011 |
| An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions A Churkin, D Barash BMC bioinformatics 9, 1-19, 2008 | 22 | 2008 |
| Nonhomogeneity of the density of states of tunneling two-level systems at low energies A Churkin, D Barash, M Schechter Physical Review B 89 (10), 104202, 2014 | 17 | 2014 |
| The RNAmute web server for the mutational analysis of RNA secondary structures A Churkin, I Gabdank, D Barash Nucleic acids research 39 (suppl_2), W92-W99, 2011 | 17 | 2011 |
| Bioinformatic analysis of the neutrality of RNA secondary structure elements across genotypes reveals evidence for direct evolution of genetic robustness in HCV A Churkin, M Cohen, Y Shemer-Avni, D Barash Journal of Bioinformatics and Computational Biology 8 (06), 1013-1026, 2010 | 16 | 2010 |
| RNAthermsw: direct temperature simulations for predicting the location of RNA thermometers A Churkin, A Avihoo, M Shapira, D Barash PLoS One 9 (4), e94340, 2014 | 12 | 2014 |
| Efficient procedures for the numerical simulation of mid-size RNA kinetics I Aviram, I Veltman, A Churkin, D Barash Algorithms for Molecular Biology 7, 1-11, 2012 | 10 | 2012 |
| The HHD dataset I Rabaev, BK Barakat, A Churkin, J El-Sana 2020 17th International Conference on Frontiers in Handwriting Recognition …, 2020 | 9 | 2020 |
| Modeling-based response-guided therapy for chronic hepatitis C under glecaprevir/pibrentasvir may identify patients for ultra-short treatment duration S Dasgupta, M Imamura, E Gorstein, T Nakahara, M Tsuge, A Churkin, ... J Infect Dis 222 (7), 1165-9, 2020 | 9 | 2020 |
| A parameter estimation method for multiscale models of hepatitis C virus dynamics V Reinharz, A Churkin, S Lewkiewicz, H Dahari, D Barash Bulletin of mathematical biology 81 (10), 3675-3721, 2019 | 9 | 2019 |
| A mathematical analysis of RNA structural motifs in viruses A Churkin, F Totzeck, R Zakh, M Parr, T Tuller, D Frishman, D Barash Mathematics 9 (6), 585, 2021 | 7 | 2021 |
| A robust and efficient numerical method for RNA-mediated viral dynamics V Reinharz, A Churkin, H Dahari, D Barash Frontiers in applied mathematics and statistics 3, 20, 2017 | 7 | 2017 |
| RNA dot plots: an image representation for RNA secondary structure analysis and manipulations A Churkin, D Barash Wiley Interdisciplinary Reviews: RNA 4 (2), 205-216, 2013 | 7 | 2013 |
| Machine learning for mathematical models of HCV kinetics during antiviral therapy A Churkin, S Kriss, A Uziel, A Goyal, R Zakh, SJ Cotler, O Etzion, ... Mathematical biosciences 343, 108756, 2022 | 6 | 2022 |
| On topological indices for small RNA graphs A Churkin, I Gabdank, D Barash Computational Biology and Chemistry 41, 35-40, 2012 | 6 | 2012 |
| Anomalous low-energy properties in amorphous solids and the interplay of electric and elastic interactions of tunneling two-level systems A Churkin, S Matityahu, AO Maksymov, AL Burin, M Schechter Physical Review B 103 (5), 054202, 2021 | 5 | 2021 |
Danny BarashBen-Gurion UniversityVerified email at bgu.ac.il
