|Implications of the hybrid epithelial/mesenchymal phenotype in metastasis|
MK Jolly, M Boareto, B Huang, D Jia, M Lu, E Ben-Jacob, JN Onuchic, ...
Frontiers in oncology 5, 155, 2015
|Tumor budding: the name is EMT. Partial EMT.|
AD Grigore, MK Jolly, D Jia, MC Farach-Carson, H Levine
Journal of clinical medicine 5 (5), 51, 2016
|Stability of the hybrid epithelial/mesenchymal phenotype|
MK Jolly, SC Tripathi, D Jia, SM Mooney, M Celiktas, SM Hanash, ...
Oncotarget 7 (19), 27067, 2016
|HIF-1-mediated suppression of acyl-CoA dehydrogenases and fatty acid oxidation is critical for cancer progression|
D Huang, T Li, X Li, L Zhang, L Sun, X He, X Zhong, D Jia, L Song, ...
Cell reports 8 (6), 1930-1942, 2014
|Coupling the modules of EMT and stemness: A tunable ‘stemness window’model|
MK Jolly, D Jia, M Boareto, SA Mani, KJ Pienta, E Ben-Jacob, H Levine
Oncotarget 6 (28), 25161, 2015
|Modeling the Genetic Regulation of Cancer Metabolism: Interplay Between Glycolysis and Oxidative Phosphorylation|
L Yu, M Lu, D Jia, J Ma, E Ben-Jacob, H Levine, BA Kaipparettu, ...
Cancer Research, 2017
|OVOL guides the epithelial-hybrid-mesenchymal transition|
D Jia, MK Jolly, M Boareto, P Parsana, SM Mooney, KJ Pienta, H Levine, ...
Oncotarget 6 (17), 15436, 2015
|Elucidating the metabolic plasticity of cancer: mitochondrial reprogramming and hybrid metabolic states|
D Jia, JH Park, KH Jung, H Levine, BA Kaipparettu
Cells 7 (3), 21, 2018
|Interrogating the topological robustness of gene regulatory circuits by randomization|
B Huang, M Lu, D Jia, E Ben-Jacob, H Levine, JN Onuchic
PLoS computational biology 13 (3), e1005456, 2017
|Elucidating cancer metabolic plasticity by coupling gene regulation with metabolic pathways|
D Jia, M Lu, KH Jung, JH Park, L Yu, JN Onuchic, BA Kaipparettu, ...
Proceedings of the National Academy of Sciences of the United States of America, 2019
|The GRHL2/ZEB feedback loop—a key axis in the regulation of EMT in breast cancer|
SM Mooney, V Talebian, MK Jolly, D Jia, M Gromala, H Levine, ...
Journal of cellular biochemistry 118 (9), 2559-2570, 2017
|Phenotypic Plasticity and Cell Fate Decisions in Cancer: Insights from Dynamical Systems Theory|
D Jia, MK Jolly, P Kulkarni, H Levine
Cancers 9 (7), 70, 2017
|Distinguishing mechanisms underlying EMT tristability|
D Jia, MK Jolly, SC Tripathi, PD Hollander, B Huang, M Lu, M Celiktas, ...
Cancer Convergence 1 (2), 2017
|Phosphorylation-induced conformational dynamics in an intrinsically disordered protein and potential role in phenotypic heterogeneity|
P Kulkarni, MK Jolly, D Jia, SM Mooney, A Bhargava, LT Kagohara, ...
Proceedings of the National Academy of Sciences 114 (13), E2644-E2653, 2017
|Testing the gene expression classification of the EMT spectrum|
D Jia, JT George, SC Tripathi, DL Kundnani, M Lu, SM Hanash, ...
Physical biology 16 (2), 025002, 2019
|Operating principles of tristable circuits regulating cellular differentiation|
D Jia, MK Jolly, W Harrison, M Boareto, E Ben-Jacob, H Levine
Physical biology 14 (3), 035007, 2017
|Quantifying cancer epithelial-mesenchymal plasticity and its association with stemness and immune response|
D Jia, X Li, F Bocci, S Tripathi, Y Deng, MK Jolly, JN Onuchic, H Levine
Journal of clinical medicine 8 (5), 725, 2019
|Interconnected feedback loops among ESRP1, HAS2, and CD44 regulate epithelial-mesenchymal plasticity in cancer|
MK Jolly, BT Preca, SC Tripathi, D Jia, JT George, SM Hanash, T Brabletz, ...
APL bioengineering 2 (3), 031908, 2018
|RACIPE: a computational tool for modeling gene regulatory circuits using randomization|
B Huang, D Jia, J Feng, H Levine, JN Onuchic, M Lu
BMC systems biology 12 (1), 1-12, 2018
|Modeling delayed processes in biological systems|
J Feng, SA Sevier, B Huang, D Jia, H Levine
Physical Review E 94 (3), 032408, 2016