| New organocatalyst scaffolds with high activity in promoting hydrazone and oxime formation at neutral pH D Larsen, M Pittelkow, S Karmakar, ET Kool Organic letters 17 (2), 274-277, 2015 | 96 | 2015 |
| Organocatalytic removal of formaldehyde adducts from RNA and DNA bases S Karmakar, EM Harcourt, DS Hewings, F Scherer, AF Lovejoy, DM Kurtz, ... Nature chemistry 7 (9), 752-758, 2015 | 49 | 2015 |
| Identification and characterization of second-generation invader locked nucleic acids (LNAs) for mixed-sequence recognition of double-stranded DNA SP Sau, AS Madsen, P Podbevsek, NK Andersen, TS Kumar, S Andersen, ... The Journal of organic chemistry 78 (19), 9560-9570, 2013 | 30 | 2013 |
| High-Affinity DNA Targeting Using Readily Accessible Mimics of N2′-Functionalized 2′-Amino-α-L-LNA S Karmakar, BA Anderson, RL Rathje, S Andersen, TB Jensen, P Nielsen, ... The Journal of organic chemistry 76 (17), 7119-7131, 2011 | 28 | 2011 |
| Invader probes: Harnessing the energy of intercalation to facilitate recognition of chromosomal DNA for diagnostic applications DC Guenther, GH Anderson, S Karmakar, BA Anderson, BA Didion, ... Chemical science 6 (8), 5006-5015, 2015 | 21 | 2015 |
| Recognition of double-stranded DNA using energetically activated duplexes with interstrand zippers of 1-, 2-or 4-pyrenyl-functionalized O 2′-alkylated RNA monomers S Karmakar, AS Madsen, DC Guenther, BC Gibbons, PJ Hrdlicka Organic & biomolecular chemistry 12 (39), 7758-7773, 2014 | 21 | 2014 |
| Invaders: Recognition of Double‐Stranded DNA by Using Duplexes Modified with Interstrand Zippers of 2′‐O‐(Pyren‐1‐yl)methyl‐ribonucleotides BA Didion, S Karmakar, DC Guenther, SP Sau, JP Verstegen, PJ Hrdlicka ChemBioChem 14 (13), 1534-1538, 2013 | 19 | 2013 |
| DNA strands with alternating incorporations of LNA and 2′-O-(pyren-1-yl) methyluridine: SNP-discriminating RNA detection probes S Karmakar, PJ Hrdlicka Chemical science 4 (9), 3447-3454, 2013 | 18 | 2013 |
| Recognition of Mixed-Sequence DNA Duplexes: Design Guidelines for Invaders Based on 2′-O-(Pyren-1-yl)methyl-RNA Monomers S Karmakar, DC Guenther, PJ Hrdlicka The Journal of organic chemistry 78 (23), 12040-12048, 2013 | 17 | 2013 |
| Bulged Invader probes: Activated duplexes for mixed-sequence dsDNA recognition with improved thermodynamic and kinetic profiles DC Guenther, S Karmakar, PJ Hrdlicka Chemical Communications 51 (81), 15051-15054, 2015 | 15 | 2015 |
| Ergonomic study of ingress-egress of an army vehicle in simulated environment S Karmakar, D Majumdar, MS Pal, D Majumdar Proceedings of international conference on trends in product lifecycle …, 2011 | 14 | 2011 |
| Self-assembled monolayers of thiols adsorbed on Au/ZnO-functionalized silica nanosprings: Photoelectron spectroscopy-analysis and detection of vaporized explosives BA Fouetio Kengne, S Karmakar, M Kaura, VVR Sai, G Corti, IB Niraula, ... ACS Applied Materials & Interfaces 6 (16), 13355-13366, 2014 | 13 | 2014 |
| Sandwich assay for mixed-sequence recognition of double-stranded DNA: Invader-based detection of targets specific to foodborne pathogens B Denn, S Karmakar, DC Guenther, PJ Hrdlicka Chemical Communications 49 (84), 9851-9853, 2013 | 13 | 2013 |
| 25 years and still going strong: 2′-O-(pyren-1-yl) methylribonucleotides–versatile building blocks for applications in molecular biology, diagnostics and materials science PJ Hrdlicka, S Karmakar Organic & biomolecular chemistry 15 (46), 9760-9774, 2017 | 11 | 2017 |
| Head-to-head comparison of LNA, MP γPNA, INA and Invader probes targeting mixed-sequence double-stranded DNA RG Emehiser, E Hall, DC Guenther, S Karmakar, PJ Hrdlicka Organic & Biomolecular Chemistry 18 (1), 56-65, 2020 | 8 | 2020 |
| Mixed-sequence recognition of double-stranded DNA using enzymatically stable phosphorothioate invader probes BA Anderson, S Karmakar, PJ Hrdlicka Molecules 20 (8), 13780-13793, 2015 | 5 | 2015 |
| Recognition of mixed-sequence DNA using double-stranded probes with interstrand zipper arrangements of O2′-triphenylene-and coronene-functionalized RNA monomers S Karmakar, DC Guenther, BC Gibbons, PJ Hrdlicka Organic & biomolecular chemistry 15 (44), 9362-9371, 2017 | 4 | 2017 |
| Synthesis and biophysical characterization of oligonucleotides modified with O2′-alkylated RNA monomers featuring substituted pyrene moieties S Karmakar, T Horrocks, BC Gibbons, DC Guenther, R Emehiser, ... Organic & biomolecular chemistry 17 (3), 609-621, 2019 | 3 | 2019 |
| Recognition of double-stranded DNA using LNA-modified toehold Invader probes SP Adhikari, P Vukelich, DC Guenther, S Karmakar, PJ Hrdlicka Organic & Biomolecular Chemistry 19 (42), 9276-9290, 2021 | 2 | 2021 |
| Nicked Invader probes: multistranded and sequence-unrestricted recognition of double-stranded DNA SP Adhikari, S Karmakar, PJ Hrdlicka Organic & Biomolecular Chemistry 20 (5), 1019-1030, 2022 | 1 | 2022 |
