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Avlant Nilsson
Avlant Nilsson
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Year
Recon3D enables a three-dimensional view of gene variation in human metabolism
E Brunk, S Sahoo, DC Zielinski, A Altunkaya, A Dräger, N Mih, F Gatto, ...
Nature biotechnology 36 (3), 272-281, 2018
6472018
Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints
BJ Sánchez, C Zhang, A Nilsson, PJ Lahtvee, EJ Kerkhoven, J Nielsen
Molecular systems biology 13 (8), 935, 2017
4152017
An atlas of human metabolism
JL Robinson, P Kocabaş, H Wang, PE Cholley, D Cook, A Nilsson, ...
Science signaling 13 (624), eaaz1482, 2020
2912020
Metabolic trade-offs in yeast are caused by F1F0-ATP synthase
A Nilsson, J Nielsen
Scientific reports 6 (1), 22264, 2016
1472016
Genome scale metabolic modeling of cancer
A Nilsson, J Nielsen
Metabolic engineering 43, 103-112, 2017
1122017
Metabolic models of protein allocation call for the kinetome
A Nilsson, J Nielsen, BO Palsson
Cell Systems 5 (6), 538-541, 2017
822017
BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data
M Garcia-Albornoz, S Thankaswamy-Kosalai, A Nilsson, L Väremo, ...
Nucleic acids research 42 (W1), W175-W181, 2014
592014
Quantitative analysis of amino acid metabolism in liver cancer links glutamate excretion to nucleotide synthesis
A Nilsson, JR Haanstra, M Engqvist, A Gerding, BM Bakker, U Klingmüller, ...
Proceedings of the National Academy of Sciences 117 (19), 10294-10304, 2020
562020
Complex I is bypassed during high intensity exercise
A Nilsson, E Björnson, M Flockhart, FJ Larsen, J Nielsen
Nature communications 10 (1), 5072, 2019
382019
Predicting growth of the healthy infant using a genome scale metabolic model
A Nilsson, A Mardinoglu, J Nielsen
Npj Systems Biology and Applications 3 (1), 3, 2017
322017
Artificial neural networks enable genome-scale simulations of intracellular signaling
A Nilsson, JM Peters, N Meimetis, B Bryson, DA Lauffenburger
Nature Communications 13 (1), 3069, 2022
242022
Antibodies against the Ebola virus soluble glycoprotein are associated with long-term vaccine-mediated protection of non-human primates
BM Gunn, RP McNamara, L Wood, S Taylor, A Devadhasan, W Guo, ...
Cell reports 42 (4), 2023
92023
Metabolite depletion affects flux profiling of cell lines
A Nilsson, JR Haanstra, B Teusink, J Nielsen
Trends in biochemical sciences 43 (6), 395-397, 2018
92018
Cancer-associated fibroblasts and squamous epithelial cells constitute a unique microenvironment in a mouse model of inflammation-induced colon cancer
PN Vega, A Nilsson, MP Kumar, H Niitsu, AJ Simmons, J Ro, J Wang, ...
Frontiers in oncology 12, 2022
82022
A dedicated database system for handling multi-level data in systems biology
N Pornputtapong, K Wanichthanarak, A Nilsson, I Nookaew, J Nielsen
Source Code for Biology and Medicine 9, 1-9, 2014
32014
Inference of drug off-target effects on cellular signaling using interactome-based deep learning
N Meimetis, DA Lauffenburger, A Nilsson
Iscience 27 (4), 2024
2024
AutoTransOP: translating omics signatures without orthologue requirements using deep learning
N Meimetis, KM Pullen, DY Zhu, A Nilsson, TN Hoang, S Magliacane, ...
NPJ Systems Biology and Applications 10 (1), 13, 2024
2024
Library-based single-cell analysis of CAR signaling reveals drivers of in vivo persistence
CR Perez, A Garmilla, A Nilsson, HM Baghdassarian, KS Gordon, ...
bioRxiv, 2024.04. 29.591541, 2024
2024
Constraint-Based Modeling of Metabolism: Interpreting Predictions of Growth and ATP Synthesis in Human and Yeast
A Nilsson
PQDT-Global, 2019
2019
Predicting metabolic strategies in Saccharomyces cerevisiae with a kinetically constrained FBA model
A Nilsson
2014
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Articles 1–20