Jean-Philippe Vert
Jean-Philippe Vert
Google Brain / Mines ParisTech
Verified email at mines-paristech.fr - Homepage
TitleCited byYear
Support vector machine applications in computational biology
B Schölkopf, K Tsuda, JP Vert
MIT press, 2004
1124*2004
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796, 2012
10982012
Group lasso with overlap and graph lasso
L Jacob, G Obozinski, JP Vert
Proceedings of the 26th annual international conference on machine learning …, 2009
8352009
Protein homology detection using string alignment kernels
H Saigo, JP Vert, N Ueda, T Akutsu
Bioinformatics 20 (11), 1682-1689, 2004
4462004
Clustered multi-task learning: A convex formulation
L Jacob, J Vert, FR Bach
Advances in neural information processing systems, 745-752, 2009
3842009
A community effort to assess and improve drug sensitivity prediction algorithms
Nature Biotechnology 32, 1202-1212, 2014
3712014
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
N Servant, N Varoquaux, BR Lajoie, E Viara, CJ Chen, JP Vert, E Heard, ...
Genome biology 16 (1), 259, 2015
3272015
A path following algorithm for the graph matching problem
M Zaslavskiy, F Bach, JP Vert
IEEE Transactions on Pattern Analysis and Machine Intelligence 31 (12), 2227 …, 2008
3212008
The influence of feature selection methods on accuracy, stability and interpretability of molecular signatures
AC Haury, P Gestraud, JP Vert
PloS one 6 (12), e28210, 2011
2882011
Protein-ligand interaction prediction: an improved chemogenomics approach
L Jacob, JP Vert
Bioinformatics 24 (19), 2149-2156, 2008
2842008
Classification of microarray data using gene networks
F Rapaport, A Zinovyev, M Dutreix, E Barillot, JP Vert
BMC bioinformatics 8 (1), 35, 2007
2792007
Protein network inference from multiple genomic data: a supervised approach
Y Yamanishi, JP Vert, M Kanehisa
Bioinformatics 20 (suppl_1), i363-i370, 2004
2742004
A primer on kernel methods
JP Vert, K Tsuda, B Schölkopf
Kernel methods in computational biology 47, 35-70, 2004
2732004
A new approach to collaborative filtering: Operator estimation with spectral regularization
J Abernethy, F Bach, T Evgeniou, JP Vert
Journal of Machine Learning Research 10 (Mar), 803-826, 2009
2572009
An accurate and interpretable model for siRNA efficacy prediction
JP Vert, N Foveau, C Lajaunie, Y Vandenbrouck
BMC bioinformatics 7 (1), 520, 2006
2482006
Graph kernels based on tree patterns for molecules
P Mahé, JP Vert
Machine learning 75 (1), 3-35, 2009
2412009
TIGRESS: trustful inference of gene regulation using stability selection
AC Haury, F Mordelet, P Vera-Licona, JP Vert
BMC systems biology 6 (1), 145, 2012
2352012
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization
V Boeva, A Zinovyev, K Bleakley, JP Vert, I Janoueix-Lerosey, O Delattre, ...
Bioinformatics 27 (2), 268-269, 2010
2282010
Graph kernels for molecular structure− activity relationship analysis with support vector machines
P Mahé, N Ueda, T Akutsu, JL Perret, JP Vert
Journal of chemical information and modeling 45 (4), 939-951, 2005
2102005
A kernel for time series based on global alignments
M Cuturi, JP Vert, O Birkenes, T Matsui
2007 IEEE International Conference on Acoustics, Speech and Signal …, 2007
2032007
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