Sudip Kundu
Sudip Kundu
Associate Professor; Department of Biophysics, Molecular Biology and Bioinformatics; University of
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Cited by
Cited by
Hydrophobic, hydrophilic, and charged amino acid networks within protein
M Aftabuddin, S Kundu
Biophysical journal 93 (1), 225-231, 2007
Responses to light intensity in a genome-scale model of rice metabolism
MG Poolman, S Kundu, R Shaw, DA Fell
Plant physiology 162 (2), 1060-1072, 2013
Genome wide expression profiling during spinal cord regeneration identifies comprehensive cellular responses in zebrafish
SP Hui, D Sengupta, SGP Lee, T Sen, S Kundu, S Mathavan, S Ghosh
PLoS One 9 (1), e84212, 2014
Amino acid network within protein
S Kundu
Physica A: Statistical Mechanics and Its Applications 346 (1-2), 104-109, 2005
Weighted and unweighted network of amino acids within protein
M Aftabuddin, S Kundu
Physica A: Statistical Mechanics and its Applications 369 (2), 895-904, 2006
Estimation of genetic variability of Vigna radiata cultivars by RAPD analysis
S Betal, PR Chowdhury, S Kundu, SS Raychaudhuri
Biologia Plantarum 48 (2), 205-209, 2004
Role of long-and short-range hydrophobic, hydrophilic and charged residues contact network in protein’s structural organization
D Sengupta, S Kundu
BMC bioinformatics 13 (1), 1-12, 2012
Sequence directed flexibility of DNA and the role of cross-strand hydrogen bonds
D Bhattacharyya, S Kundu, AR Thakur, R Majumdar
Journal of Biomolecular Structure and Dynamics 17 (2), 289-300, 1999
Revisiting the chlorophyll biosynthesis pathway using genome scale metabolic model of Oryza sativa japonica
A Chatterjee, S Kundu
Scientific reports 5 (1), 1-15, 2015
Regulatory cross-talks and cascades in rice hormone biosynthesis pathways contribute to stress signaling
A Deb, RK Grewal, S Kundu
Frontiers in plant science 7, 1303, 2016
AMINONET–a tool to construct and visualize amino acid networks, and to calculate topological parameters
M Aftabuddin, S Kundu
Journal of Applied Crystallography 43 (2), 367-369, 2010
Analysis of phylogeny and codon usage bias and relationship of GC content, amino acid composition with expression of the structural nif genes
SK Mondal, S Kundu, R Das, S Roy
Journal of Biomolecular Structure and Dynamics 34 (8), 1649-1666, 2016
Deciphering cis-regulatory element mediated combinatorial regulation in rice under blast infected condition
A Deb, S Kundu
PLoS One 10 (9), e0137295, 2015
Metabolic trade-offs between biomass synthesis and photosynthate export at different light intensities in a genome–scale metabolic model of rice
MG Poolman, S Kundu, R Shaw, DA Fell
Frontiers in plant science 5, 656, 2014
Finding the generalized molecular principles of protein thermal stability
S Hait, S Mallik, S Basu, S Kundu
Proteins: Structure, Function, and Bioinformatics 88 (6), 788-808, 2020
A comparative computational study of the ‘rbcL’ gene in plants and in the three prokaryotic families—Archaea, cyanobacteria and proteobacteria
SK Mondal, S Shit, S Kundu
NISCAIR-CSIR, India, 2013
Assembly constraints drive co-evolution among ribosomal constituents
S Mallik, H Akashi, S Kundu
Nucleic acids research 43 (11), 5352-5363, 2015
A comparison of structural and evolutionary attributes of Escherichia coli and Thermus thermophilus small ribosomal subunits: signatures of thermal adaptation
S Mallik, S Kundu
PloS one 8 (8), e69898, 2013
Co-evolutionary constraints of globular proteins correlate with their folding rates
S Mallik, S Kundu
FEBS letters 589 (17), 2179-2185, 2015
Topology and Oligomerization of Mono- and Oligomeric Proteins Regulate Their Half-Lives in the Cell
S Mallik, S Kundu
Structure 26, 1-10, 2018
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