| GENESIS 1.1: A hybrid‐parallel molecular dynamics simulator with enhanced sampling algorithms on multiple computational platforms C Kobayashi, J Jung, Y Matsunaga, T Mori, T Ando, K Tamura, M Kamiya, ... Journal of Computational Chemistry 38 (25), 2193-2206, 2017 | 158 | 2017 |
| Atomistic modeling of alternating access of a mitochondrial ADP/ATP membrane transporter with molecular simulations K Tamura, S Hayashi PLoS One 12 (7), e0181489, 2017 | 18 | 2017 |
| Linear Response Path Following: A Molecular Dynamics Method To Simulate Global Conformational Changes of Protein upon Ligand Binding K Tamura, S Hayashi Journal of chemical theory and computation 11 (7), 2900-2917, 2015 | 18 | 2015 |
| Free energy analysis of a conformational change of heme ABC transporter BhuUV-T K Tamura, Y Sugita The Journal of Physical Chemistry Letters 11 (8), 2824-2829, 2020 | 9 | 2020 |
| Chemo-mechanical coupling in the transport cycle of a heme ABC transporter K Tamura, H Sugimoto, Y Shiro, Y Sugita The Journal of Physical Chemistry B 123 (34), 7270-7281, 2019 | 6 | 2019 |
| Role of Bulk Water Environment in Regulation of Functional Hydrogen-Bond Network in Photoactive Yellow Protein K Tamura, S Hayashi The Journal of Physical Chemistry B 119 (51), 15537-15549, 2015 | 6 | 2015 |
| A computational method to simulate global conformational changes of proteins induced by cosolvent S Tanimoto, K Tamura, S Hayashi, N Yoshida, H Nakano Journal of Computational Chemistry 42 (8), 552-563, 2021 | 4 | 2021 |
| GENESIS website C Kobayashi, J Jung, Y Matsunaga, T Mori, T Ando, K Tamura, M Kamiya, ... GENESIS 1 (0), 0 | 2 | |
| Computational modeling of the outward-facing form and the occluded intermediate of a heme importer with bound nucleotides K Tamura, H Sugimoto, Y Shiro, Y Sugita ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 256, 2018 | | 2018 |
| Atomistically Deciphering Functional Large Conformational Changes of Proteins with Molecular Simulations K Tamura 10.14989/doctor.k19521, 2016 | | 2016 |
| Role of Bulk Water Environment in Regulation of Functional Hydrogen-Bond Network in Photoactive Yellow Protein T Koichi, H Shigehiko | | 2015 |
| 1P099 A plausible model for the structurally unknown inward-facing conformation of ADP/ATP carrier: A molecular dynamics study (03. Membrane proteins, Poster, The 52nd Annual … K Tamura, S Hayashi Seibutsu Butsuri 54 (supplement1-2), S157, 2014 | | 2014 |
| 1P042 A theoretical study on the large conformational change of ADP/ATP carrier (01B. Protein: Structure & Function, Poster) K Tamura, S Hayashi Seibutsu Butsuri 53 (supplement1-2), S112, 2013 | | 2013 |
| 3B1034 A Novel Method to simulate protein conformational change upon ligand binding (Proteins: Structure & Function III: Dynamics and Circadian Rhythm, Oral Presentation, The … K Tamura, S Hayashi Seibutsu Butsuri 52 (supplement), S59, 2012 | | 2012 |
Yuji SugitaRIKENVerified email at riken.go.jp
