| Streaming algorithms for biological sequence alignment on GPUs W Liu, B Schmidt, G Voss, W Muller-Wittig IEEE transactions on parallel and distributed systems 18 (9), 1270-1281, 2007 | 234 | 2007 |
| Accelerating molecular dynamics simulations using Graphics Processing Units with CUDA W Liu, B Schmidt, G Voss, W Müller-Wittig Computer physics communications 179 (9), 634-641, 2008 | 202 | 2008 |
| Bio-sequence database scanning on a GPU W Liu, B Schmidt, G Voss, A Schroder, W Muller-Wittig Proceedings 20th IEEE International Parallel & Distributed Processing …, 2006 | 164 | 2006 |
| 9-Pflops nonlinear earthquake simulation on Sunway TaihuLight: enabling depiction of 18-Hz and 8-meter scenarios H Fu, C He, B Chen, Z Yin, Z Zhang, W Zhang, T Zhang, W Xue, W Liu, ... Proceedings of the International Conference for High Performance Computing …, 2017 | 141 | 2017 |
| CUDA-BLASTP: accelerating BLASTP on CUDA-enabled graphics hardware W Liu, B Schmidt, W Muller-Wittig IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (6 …, 2011 | 109 | 2011 |
| CUDA–MEME: accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units Y Liu, B Schmidt, W Liu, DL Maskell Pattern Recognition Letters 31 (14), 2170-2177, 2010 | 97 | 2010 |
| Molecular dynamics simulations on commodity GPUs with CUDA W Liu, B Schmidt, G Voss, W Müller-Wittig High Performance Computing–HiPC 2007: 14th International Conference, Goa …, 2007 | 94 | 2007 |
| A parallel algorithm for error correction in high-throughput short-read data on CUDA-enabled graphics hardware H Shi, B Schmidt, W Liu, W Müller-Wittig Journal of Computational Biology 17 (4), 603-615, 2010 | 88 | 2010 |
| Computing platforms for big biological data analytics: perspectives and challenges Z Yin, H Lan, G Tan, M Lu, AV Vasilakos, W Liu Computational and structural biotechnology journal 15, 403-411, 2017 | 78 | 2017 |
| GPU-ClustalW: Using graphics hardware to accelerate multiple sequence alignment W Liu, B Schmidt, G Voss, W Müller-Wittig High Performance Computing-HiPC 2006: 13th International Conference …, 2006 | 75 | 2006 |
| Redesigning CAM-SE for peta-scale climate modeling performance and ultra-high resolution on Sunway TaihuLight H Fu, J Liao, N Ding, X Duan, L Gan, Y Liang, X Wang, J Yang, Y Zheng, ... Proceedings of the international conference for high performance computing …, 2017 | 65 | 2017 |
| Vector coevolving particle swarm optimization algorithm Q Zhang, W Liu, X Meng, B Yang, AV Vasilakos Information sciences 394, 273-298, 2017 | 64 | 2017 |
| End-to-end I/O monitoring on leading supercomputers B Yang, W Xue, T Zhang, S Liu, X Ma, X Wang, W Liu ACM Transactions on Storage 19 (1), 1-35, 2023 | 60 | 2023 |
| Redesigning LAMMPS for peta-scale and hundred-billion-atom simulation on Sunway TaihuLight X Duan, P Gao, T Zhang, M Zhang, W Liu, W Zhang, W Xue, H Fu, L Gan, ... SC18: International conference for high performance computing, networking …, 2018 | 57 | 2018 |
| Performance predictions for general-purpose computation on GPUs W Liu, W Muller-Wittig, B Schmidt 2007 International Conference on Parallel Processing (ICPP 2007), 50-50, 2007 | 45 | 2007 |
| Optimizing high-resolution Community Earth System Model on a heterogeneous many-core supercomputing platform S Zhang, H Fu, L Wu, Y Li, H Wang, Y Zeng, X Duan, W Wan, L Wang, ... Geoscientific Model Development 13 (10), 4809-4829, 2020 | 42 | 2020 |
| Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA H Shi, B Schmidt, W Liu, W Muller-Wittig 2009 IEEE International Symposium on Parallel & Distributed Processing, 1-8, 2009 | 41 | 2009 |
| Xsw: Accelerating biological database search on xeon phi L Wang, Y Chan, X Duan, H Lan, X Meng, W Liu 2014 IEEE International Parallel & Distributed Processing Symposium …, 2014 | 37 | 2014 |
| Parallel mutual information estimation for inferring gene regulatory networks on GPUs H Shi, B Schmidt, W Liu, W Müller-Wittig BMC research notes 4, 1-10, 2011 | 36 | 2011 |
| Automatic,{Application-Aware}{I/O} forwarding resource allocation X Ji, B Yang, T Zhang, X Ma, X Zhu, X Wang, N El-Sayed, J Zhai, W Liu, ... 17th USENIX Conference on File and Storage Technologies (FAST 19), 265-279, 2019 | 32 | 2019 |
