| Ultrastructural details of mammalian chromosome architecture N Krietenstein, S Abraham, SV Venev, N Abdennur, J Gibcus, THS Hsieh, ... Molecular cell 78 (3), 554-565. e7, 2020 | 401 | 2020 |
| A chromosome folding intermediate at the condensin-to-cohesin transition during telophase K Abramo, AL Valton, SV Venev, H Ozadam, AN Fox, J Dekker Nature cell biology 21 (11), 1393-1402, 2019 | 153 | 2019 |
| Systematic evaluation of chromosome conformation capture assays B Akgol Oksuz, L Yang, S Abraham, SV Venev, N Krietenstein, KM Parsi, ... Nature methods 18 (9), 1046-1055, 2021 | 121 | 2021 |
| Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics H Belaghzal, T Borrman, AD Stephens, DL Lafontaine, SV Venev, Z Weng, ... Nature genetics 53 (3), 367-378, 2021 | 83 | 2021 |
| Cohesin-mediated loop anchors confine the locations of human replication origins DJ Emerson, PA Zhao, AL Cook, RJ Barnett, KN Klein, D Saulebekova, ... Nature 606 (7915), 812-819, 2022 | 56 | 2022 |
| Correlation of fitness landscapes from three orthologous TIM barrels originates from sequence and structure constraints YH Chan, SV Venev, KB Zeldovich, CR Matthews Nature Communications 8 (14614), 2017 | 53 | 2017 |
| Quantitative glycoproteomics reveals new classes of STT3A-and STT3B-dependent N-glycosylation sites NA Cherepanova, SV Venev, JD Leszyk, SA Shaffer, R Gilmore Journal of Cell Biology 218 (8), 2782-2796, 2019 | 50 | 2019 |
| Cohesin mutations alter DNA damage repair and chromatin structure and create therapeutic vulnerabilities in MDS/AML Z Tothova, AL Valton, RA Gorelov, M Vallurupalli, JM Krill-Burger, ... JCI insight 6 (3), 2021 | 49 | 2021 |
| A cohesin traffic pattern genetically linked to gene regulation AL Valton, SV Venev, B Mair, ES Khokhar, AHY Tong, M Usaj, K Chan, ... Nature structural & molecular biology 29 (12), 1239-1251, 2022 | 35 | 2022 |
| Cooltools: enabling high-resolution Hi-C analysis in Python Open2C, N Abdennur, S Abraham, G Fudenberg, IM Flyamer, ... BioRxiv, 2022.10. 31.514564, 2022 | 31 | 2022 |
| mirnylab/pairtools: v0. 2.0 A Goloborodko, N Abdennur, S Venev, HB Brandao, G Fudenberg Zenodo, 2018 | 28 | 2018 |
| Direct and inverse micelles of diblock copolymers with a polyelectrolyte block: Effect of equilibrium distribution of counterions SV Venev, P Reineker, II Potemkin Macromolecules 43 (24), 10735-10742, 2010 | 28 | 2010 |
| Compartment-dependent chromatin interaction dynamics revealed by liquid chromatin Hi-C H Belaghzal, T Borrman, AD Stephens, DL Lafontaine, SV Venev, Z Weng, ... BioRxiv, 704957, 2019 | 26 | 2019 |
| Synonymous mutations at the beginning of the influenza A virus hemagglutinin gene impact experimental fitness AS Canale, SV Venev, TW Whitfield, DR Caffrey, WA Marasco, ... Journal of molecular biology 430 (8), 1098-1115, 2018 | 21 | 2018 |
| Positive selection drives preferred segment combinations during influenza virus reassortment KB Zeldovich, P Liu, N Renzette, M Foll, ST Pham, SV Venev, ... Molecular Biology and Evolution 32 (6), 1519-1532, 2015 | 19 | 2015 |
| Pairtools: from sequencing data to chromosome contacts N Abdennur, G Fudenberg, IM Flyamer, AA Galitsyna, A Goloborodko, ... bioRxiv, 2023 | 18 | 2023 |
| Asparagine-linked glycosylation is not directly coupled to protein translocation across the endoplasmic reticulum in Saccharomyces cerevisiae S Shrimal, NA Cherepanova, EC Mandon, SV Venev, R Gilmore Molecular biology of the cell 30 (21), 2626-2638, 2019 | 16 | 2019 |
| Thermophilic adaptation in prokaryotes is constrained by metabolic costs of proteostasis SV Venev, KB Zeldovich Molecular Biology and Evolution 35 (1), 211-224, 2018 | 16 | 2018 |
| Bioframe: operations on genomic intervals in pandas dataframes Open2C, N Abdennur, G Fudenberg, IM Flyamer, AA Galitsyna, ... Bioinformatics, btae088, 2024 | 14 | 2024 |
| open2c/cooltools: v0. 4.1 S Venev, N Abdennur, A Goloborodko, I Flyamer, G Fudenberg, J Nuebler, ... Zenodo10 5281, 2021 | 14 | 2021 |
Daniel BolonProfessor of Biochemistry, University of Massachusetts Medical SchoolVerified email at umassmed.edu
