| Curvature in metabolic scaling T Kolokotrones, V Savage, EJ Deeds, W Fontana Nature 464 (7289), 753-756, 2010 | 379 | 2010 |
| Sizing up allometric scaling theory VM Savage, EJ Deeds, W Fontana PLoS computational biology 4 (9), e1000171, 2008 | 279 | 2008 |
| Machine learning classification can reduce false positives in structure-based virtual screening YO Adeshina, EJ Deeds, J Karanicolas Proceedings of the National Academy of Sciences 117 (31), 18477-18488, 2020 | 140 | 2020 |
| A simple physical model for scaling in protein-protein interaction networks EJ Deeds, O Ashenberg, EI Shakhnovich Proceedings of the National Academy of Sciences 103 (2), 311-316, 2006 | 133 | 2006 |
| Crosstalk and the evolution of specificity in two-component signaling MA Rowland, EJ Deeds Biophysical Journal 106 (2), 378a, 2014 | 131 | 2014 |
| Fundamental trade-offs between information flow in single cells and cellular populations R Suderman, JA Bachman, A Smith, PK Sorger, EJ Deeds Proceedings of the National Academy of Sciences 114 (22), 5755-5760, 2017 | 125 | 2017 |
| Protein structure and evolutionary history determine sequence space topology BE Shakhnovich, E Deeds, C Delisi, E Shakhnovich Genome research 15 (3), 385-392, 2005 | 107 | 2005 |
| Robust protein–protein interactions in crowded cellular environments EJ Deeds, O Ashenberg, J Gerardin, EI Shakhnovich Proceedings of the National Academy of Sciences 104 (38), 14952-14957, 2007 | 86 | 2007 |
| Understanding ensemble protein folding at atomic detail IA Hubner, EJ Deeds, EI Shakhnovich Proceedings of the National Academy of Sciences 103 (47), 17747-17752, 2006 | 84 | 2006 |
| Machines vs. ensembles: effective MAPK signaling through heterogeneous sets of protein complexes R Suderman, EJ Deeds PLoS computational biology 9 (10), e1003278, 2013 | 63 | 2013 |
| Crosstalk and competition in signaling networks MA Rowland, W Fontana, EJ Deeds Biophysical journal 103 (11), 2389-2398, 2012 | 63 | 2012 |
| High-resolution protein folding with a transferable potential IA Hubner, EJ Deeds, EI Shakhnovich Proceedings of the National Academy of Sciences 102 (52), 18914-18919, 2005 | 58 | 2005 |
| Optimizing ring assembly reveals the strength of weak interactions EJ Deeds, JA Bachman, W Fontana Proceedings of the National Academy of Sciences 109 (7), 2348-2353, 2012 | 54 | 2012 |
| Combinatorial complexity and compositional drift in protein interaction networks EJ Deeds, J Krivine, J Feret, V Danos, W Fontana PloS one 7 (3), e32032, 2012 | 51 | 2012 |
| Maturation of the proteasome core particle induces an affinity switch that controls regulatory particle association PS Wani, MA Rowland, A Ondracek, EJ Deeds, J Roelofs Nature communications 6 (1), 6384, 2015 | 49 | 2015 |
| Prokaryotic phylogenies inferred from protein structural domains EJ Deeds, H Hennessey, EI Shakhnovich Genome Research 15 (3), 393-402, 2005 | 47 | 2005 |
| Protein evolution within a structural space EJ Deeds, NV Dokholyan, EI Shakhnovich Biophysical journal 85 (5), 2962-2972, 2003 | 45 | 2003 |
| Structural properties of non-traditional drug targets present new challenges for virtual screening R Gowthaman, EJ Deeds, J Karanicolas Journal of chemical information and modeling 53 (8), 2073-2081, 2013 | 40 | 2013 |
| A novel metric reveals previously unrecognized distortion in dimensionality reduction of scRNA-Seq data SM Cooley, T Hamilton, SD Aragones, JCJ Ray, EJ Deeds Biorxiv, 689851, 2019 | 38 | 2019 |
| Crosstalk and the evolvability of intracellular communication MA Rowland, JM Greenbaum, EJ Deeds Nature Communications 8 (1), 16009, 2017 | 31 | 2017 |
