|Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project|
ENCODE Project Consortium
nature 447 (7146), 799, 2007
|RNA maps reveal new RNA classes and a possible function for pervasive transcription|
P Kapranov, J Cheng, S Dike, DA Nix, R Duttagupta, AT Willingham, ...
Science 316 (5830), 1484-1488, 2007
|Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution|
J Cheng, P Kapranov, J Drenkow, S Dike, S Brubaker, S Patel, J Long, ...
science 308 (5725), 1149-1154, 2005
|Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs|
S Cawley, S Bekiranov, HH Ng, P Kapranov, EA Sekinger, D Kampa, ...
Cell 116 (4), 499-509, 2004
|Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22|
D Kampa, J Cheng, P Kapranov, M Yamanaka, S Brubaker, S Cawley, ...
Genome research 14 (3), 331-342, 2004
|Genie—gene finding in Drosophila melanogaster|
MG Reese, D Kulp, H Tammana, D Haussler
Genome Research 10 (4), 529-538, 2000
|Transcriptional landscape of the human and fly genomes: nonlinear and multifunctional modular model of transcriptomes|
AT Willingham, S Dike, J Cheng, JR Manak, I Bell, E Cheung, J Drenkow, ...
Cold Spring Harbor symposia on quantitative biology 71, 101-110, 2006
|Induction of microRNA-21 contributes to the oncogenic potential of Stat3|
D Löller, K Brocke-Heidrich, G Pfeifer, C Fried, J Hackermüller, ...
BMC Genomics 7 (25), 2006
|Global mapping of functionally-important and regulatory regions on human chromosomes 21 and 22 reveal novel regulatory networks in the human genome|
D Kampa, P Kapranov, S Cawley, S Bekiranov, HH Ng, EA Sekinger, ...
American Journal of Human Genetics 73 (5), 185-185, 2003
|Evidence of coordinated regulation of coding and novel transcription in the chromosomes 21 and 22 in the embryonic cancer cell line NCCIT|
VI Sementchenko, S Bekiranov, SE Cawley, HH Ng, P Kapranov, ...
Cancer Research 64 (7 Supplement), 218-218, 2004
|Novel RNAs Identified From an In-Depth Analysis of the|
AP Drenkow, S Bekiranov, G Helt, H Tammana, TR Gingeras
Genome Research 14, 331-342, 2004
|Hidden complexities of the human genome revealed by unbiased mapping of transcriptome|
P Kapranov, S Cawley, S Bekiranov, HH Ng, EA Sekinger, D Kampa, ...
American Journal of Human Genetics 73 (5), 419-419, 2003
|Long Distance and Global Transcription Networks Characterize ENCODE Regions|
R Guigó, F Denoeud, A Reymond, P Kapranov, J Rozowsky, D Zheng, ...