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Francesco Di Palma
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Year
The role of nucleobase interactions in RNA structure and dynamics
S Bottaro, F Di Palma, G Bussi
Nucleic acids research 42 (21), 13306-13314, 2014
1292014
Ligand-induced stabilization of the aptamer terminal helix in the add adenine riboswitch
F Di Palma, F Colizzi, G Bussi
RNA 19 (11), 1517-1524, 2013
512013
Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations
F Di Palma, S Bottaro, G Bussi
BMC bioinformatics 16 (9), 1-9, 2015
312015
Insights into the homo-oligomerization properties of N-terminal coiled-coil domain of Ebola virus VP35 protein
VK Ramaswamy, F Di Palma, AV Vargiu, A Corona, D Piano, ...
Virus research 247, 61-70, 2018
182018
Structural-dynamical investigation of the ZnuA histidine-rich loop: involvement in zinc management and transport
M Falconi, F Oteri, F Di Palma, S Pandey, A Battistoni, A Desideri
Journal of computer-aided molecular design 25 (2), 181-194, 2011
182011
Relevance of Ebola virus VP35 homo-dimerization on the type I interferon cascade inhibition
F Di Palma, GL Daino, VK Ramaswamy, A Corona, A Frau, E Fanunza, ...
Antiviral Chemistry and Chemotherapy 27, 2040206619889220, 2019
172019
Dynamics behind affinity maturation of an anti‐HCMV antibody family influencing antigen binding
F Di Palma, A Tramontano
FEBS letters 591 (18), 2936-2950, 2017
92017
Using reweighted pulling simulations to characterize conformational changes in riboswitches
F Di Palma, F Colizzi, G Bussi
Methods in enzymology 553, 139-162, 2015
62015
Towards de novo RNA 3D structure prediction
S Bottaro, F Di Palma, G Bussi
arXiv preprint arXiv:1502.05667, 2015
52015
Probing interplays between human XBP1u translational arrest peptide and 80S ribosome
F Di Palma, S Decherchi, F Pardo-Avila, S Succi, M Levitt, G von Heijne, ...
Journal of chemical theory and computation 18 (3), 1905-1914, 2021
42021
Ligandability and druggability assessment via machine learning
F Di Palma, C Abate, S Decherchi, A Cavalli
Wiley Interdisciplinary Reviews: Computational Molecular Science, e1676, 2023
32023
Role of Magnesium Ions and Ligand Stacking in the Adenine Riboswitch Folding
F Di Palma, F Colizzi, G Bussi
Biophysical Journal 106 (2), 285a, 2014
22014
New Insights into the LANCL2-ABA Binding Mode towards the Evaluation of New LANCL Agonists
N Scarano, F Di Palma, N Origlia, F Musumeci, S Schenone, S Spinelli, ...
Pharmaceutics 15 (12), 2754, 2023
12023
Molecular Dynamics and Machine Learning Give Insights on the Flexibility–Activity Relationships in Tyrosine Kinome
S Majumdar, F Di Palma, F Spyrakis, S Decherchi, A Cavalli
Journal of Chemical Information and Modeling 63 (15), 4814-4826, 2023
12023
Three-stage multiscale modelling of the NMDA neuroreceptor
F Di Palma, S Succi, F Sterpone, M Lauricella, F Pérot, S Melchionna
Molecular Physics 119 (19-20), e1928312, 2021
12021
Insights into Ebola VP35 oligomerization from molecular simulations
F Di Palma, VK Ramaswamy, G Daino, A Frau, A Corona, L Zinzula, ...
255th ACS National Meeting & Exposition 255, 2018
2018
Conformational changes in the adenine riboswitch
F Di Palma
SISSA, 2014
2014
Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations
S Bottaro, F Di Palma, G Bussi
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