Matthew W. Vaughn
Matthew W. Vaughn
Texas Advanced Computing Center
Verified email at tacc.utexas.edu
Title
Cited by
Cited by
Year
The B73 maize genome: complexity, diversity, and dynamics
PS Schnable, D Ware, RS Fulton, JC Stein, F Wei, S Pasternak, C Liang, ...
science 326 (5956), 1112-1115, 2009
34882009
Role of transposable elements in heterochromatin and epigenetic control
Z Lippman, AV Gendrel, M Black, MW Vaughn, N Dedhia, WR McCombie, ...
Nature 430 (6998), 471-476, 2004
12262004
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
RK Slotkin, M Vaughn, F Borges, M Tanurdžić, JD Becker, JA Feijó, ...
Cell 136 (3), 461-472, 2009
8792009
The iPlant collaborative: cyberinfrastructure for plant biology
SA Goff, M Vaughn, S McKay, E Lyons, AE Stapleton, D Gessler, ...
Frontiers in plant science 2, 34, 2011
4362011
Epigenetic natural variation in Arabidopsis thaliana
MW Vaughn, M Tanurdžić, Z Lippman, H Jiang, R Carrasquillo, ...
PLoS Biol 5 (7), e174, 2007
4322007
Comparative functional genomics of the fission yeasts
N Rhind, Z Chen, M Yassour, DA Thompson, BJ Haas, N Habib, ...
Science 332 (6032), 930-936, 2011
4102011
Argonaute slicing is required for heterochromatic silencing and spreading
DV Irvine, M Zaratiegui, NH Tolia, DB Goto, DH Chitwood, MW Vaughn, ...
Science 313 (5790), 1134-1137, 2006
2422006
Sucrose-mediated transcriptional regulation of sucrose symporter activity in the phloem
MW Vaughn, GN Harrington, DR Bush
Proceedings of the National Academy of Sciences 99 (16), 10876-10880, 2002
2262002
The iPlant collaborative: cyberinfrastructure for enabling data to discovery for the life sciences
N Merchant, E Lyons, S Goff, M Vaughn, D Ware, D Micklos, P Antin
PLoS biology 14 (1), e1002342, 2016
1952016
Epigenomic consequences of immortalized plant cell suspension culture
M Tanurdzic, MW Vaughn, H Jiang, TJ Lee, RK Slotkin, B Sosinski, ...
PLoS Biol 6 (12), e302, 2008
1902008
Epigenetic and genetic influences on DNA methylation variation in maize populations
SR Eichten, R Briskine, J Song, Q Li, R Swanson-Wagner, PJ Hermanson, ...
The Plant Cell 25 (8), 2783-2797, 2013
1802013
Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm
AJ Waters, I Makarevitch, SR Eichten, RA Swanson-Wagner, CT Yeh, ...
The Plant Cell 23 (12), 4221-4233, 2011
1762011
MicroRNA-targeted and small interfering RNA–mediated mRNA degradation is regulated by Argonaute, Dicer, and RNA-dependent RNA polymerase in Arabidopsis
M Ronemus, MW Vaughn, RA Martienssen
The Plant Cell 18 (7), 1559-1574, 2006
1732006
Araport: the Arabidopsis information portal
V Krishnakumar, MR Hanlon, S Contrino, ES Ferlanti, S Karamycheva, ...
Nucleic acids research 43 (D1), D1003-D1009, 2015
1662015
Jetstream: a self-provisioned, scalable science and engineering cloud environment
CA Stewart, TM Cockerill, I Foster, D Hancock, N Merchant, E Skidmore, ...
Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by …, 2015
1542015
Heritable epigenetic variation among maize inbreds
SR Eichten, RA Swanson-Wagner, JC Schnable, AJ Waters, ...
PLoS Genet 7 (11), e1002372, 2011
1412011
Spreading of heterochromatin is limited to specific families of maize retrotransposons
SR Eichten, NA Ellis, I Makarevitch, CT Yeh, JI Gent, L Guo, KM McGinnis, ...
PLoS Genet 8 (12), e1003127, 2012
1312012
RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome
Q Li, JI Gent, G Zynda, J Song, I Makarevitch, CD Hirsch, CN Hirsch, ...
Proceedings of the National Academy of Sciences 112 (47), 14728-14733, 2015
1162015
Lid2 is required for coordinating H3K4 and H3K9 methylation of heterochromatin and euchromatin
F Li, M Huarte, M Zaratiegui, MW Vaughn, Y Shi, R Martienssen, ...
Cell 135 (2), 272-283, 2008
1162008
S. pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription
F Lan, M Zaratiegui, J Villén, MW Vaughn, A Verdel, M Huarte, Y Shi, ...
Molecular cell 26 (1), 89-101, 2007
1112007
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