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Jeffrey McKnight
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The chromodomains of the Chd1 chromatin remodeler regulate DNA access to the ATPase motor
G Hauk, JN McKnight, IM Nodelman, GD Bowman
Molecular cell 39 (5), 711-723, 2010
2462010
Rapid DNA–protein cross-linking and strand scission by an abasic site in a nucleosome core particle
JT Sczepanski, RS Wong, JN McKnight, GD Bowman, MM Greenberg
Proceedings of the National Academy of Sciences 107 (52), 22475-22480, 2010
1952010
Extranucleosomal DNA binding directs nucleosome sliding by Chd1
JN McKnight, KR Jenkins, IM Nodelman, T Escobar, GD Bowman
Molecular and cellular biology 31 (23), 4746-4759, 2011
1372011
Global promoter targeting of a conserved lysine deacetylase for transcriptional shutoff during quiescence entry
JN McKnight, JW Boerma, LL Breeden, T Tsukiyama
Molecular cell 59 (5), 732-743, 2015
1092015
Dynamic regulation of transcription factors by nucleosome remodeling
M Li, A Hada, P Sen, L Olufemi, MA Hall, BY Smith, S Forth, JN McKnight, ...
Elife 4, e06249, 2015
1052015
Condensin-dependent chromatin compaction represses transcription globally during quiescence
SG Swygert, S Kim, X Wu, T Fu, TH Hsieh, OJ Rando, RN Eisenman, ...
Molecular Cell 73 (3), 533-546. e4, 2019
842019
Identification of residues in chromodomain helicase DNA-binding protein 1 (Chd1) required for coupling ATP hydrolysis to nucleosome sliding
A Patel, JN McKnight, P Genzor, GD Bowman
Journal of Biological Chemistry 286 (51), 43984-43993, 2011
572011
Enzymatic excision of uracil residues in nucleosomes depends on the local DNA structure and dynamics
Y Ye, MR Stahley, J Xu, JI Friedman, Y Sun, JN McKnight, JJ Gray, ...
Biochemistry 51 (30), 6028-6038, 2012
502012
Decoupling nucleosome recognition from DNA binding dramatically alters the properties of the Chd1 chromatin remodeler
A Patel, S Chakravarthy, S Morrone, IM Nodelman, JN McKnight, ...
Nucleic Acids Research 41 (3), 1637-1648, 2013
492013
Genome‐wide analysis of Nucleosome positions, occupancy, and accessibility in yeast: nucleosome mapping, high‐resolution histone ChIP, and NCAM
J Rodriguez, JN McKnight, T Tsukiyama
Current protocols in molecular biology 108 (1), 21.28. 1-21.28. 16, 2014
382014
Sequence-targeted nucleosome sliding in vivo by a hybrid Chd1 chromatin remodeler
JN McKnight, T Tsukiyama, GD Bowman
Genome research 26 (5), 693-704, 2016
352016
The conserved HDAC Rpd3 drives transcriptional quiescence in S. cerevisiae
JN McKnight, T Tsukiyama
Genomics Data 6, 245-248, 2015
162015
Basis of specificity for a conserved and promiscuous chromatin remodeling protein
DA Donovan, JG Crandall, VN Truong, AL Vaaler, TB Bailey, D Dinwiddie, ...
Elife 10, e64061, 2021
152021
Engineered chromatin remodeling proteins for precise nucleosome positioning
DA Donovan, JG Crandall, OGB Banks, ZD Jensvold, V Truong, ...
Cell reports 29 (8), 2520-2535. e4, 2019
152019
Sequence‐specific targeting of chromatin remodelers organizes precisely positioned nucleosomes throughout the genome
GD Bowman, JN McKnight
BioEssays 39 (1), 1-8, 2017
152017
Rapid and inexpensive preparation of genome-wide nucleosome footprints from model and non-model organisms
LE McKnight, JG Crandall, TB Bailey, OGB Banks, KN Orlandi, VN Truong, ...
STAR protocols 2 (2), 100486, 2021
92021
Condensin-dependent chromatin condensation represses transcription globally during quiescence
SG Swygert, S Kim, X Wu, T Fu, TH Hsieh, OJ Rando, RN Eisenman, ...
bioRxiv, 320895, 2018
72018
A molecular off switch for transcriptional quiescence
JN McKnight, LL Breeden, T Tsukiyama
Cell Cycle 14 (23), 3667-3668, 2015
72015
Tup1 is critical for transcriptional repression in Quiescence in S. cerevisiae
TB Bailey, PA Whitty, EU Selker, JN McKnight, LE McKnight
Plos Genetics 18 (12), e1010559, 2022
62022
Lewis Acid‐Induced N‐Methyleneamines as Initiators in the Synthesis of Secondary Amine‐Terminated Polymers
JN McKnight, ES Tillman, LR Sarry
Macromolecular rapid communications 27 (18), 1578-1583, 2006
42006
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Articles 1–20