Jeffrey McKnight
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The chromodomains of the Chd1 chromatin remodeler regulate DNA access to the ATPase motor
G Hauk, JN McKnight, IM Nodelman, GD Bowman
Molecular cell 39 (5), 711-723, 2010
Rapid DNA–protein cross-linking and strand scission by an abasic site in a nucleosome core particle
JT Sczepanski, RS Wong, JN McKnight, GD Bowman, MM Greenberg
Proceedings of the National Academy of Sciences 107 (52), 22475-22480, 2010
Extranucleosomal DNA binding directs nucleosome sliding by Chd1
JN McKnight, KR Jenkins, IM Nodelman, T Escobar, GD Bowman
Molecular and cellular biology 31 (23), 4746-4759, 2011
Global promoter targeting of a conserved lysine deacetylase for transcriptional shutoff during quiescence entry
JN McKnight, JW Boerma, LL Breeden, T Tsukiyama
Molecular cell 59 (5), 732-743, 2015
Dynamic regulation of transcription factors by nucleosome remodeling
M Li, A Hada, P Sen, L Olufemi, MA Hall, BY Smith, S Forth, JN McKnight, ...
Elife 4, e06249, 2015
Condensin-dependent chromatin compaction represses transcription globally during quiescence
SG Swygert, S Kim, X Wu, T Fu, TH Hsieh, OJ Rando, RN Eisenman, ...
Molecular Cell 73 (3), 533-546. e4, 2019
Identification of residues in chromodomain helicase DNA-binding protein 1 (Chd1) required for coupling ATP hydrolysis to nucleosome sliding
A Patel, JN McKnight, P Genzor, GD Bowman
Journal of Biological Chemistry 286 (51), 43984-43993, 2011
Decoupling nucleosome recognition from DNA binding dramatically alters the properties of the Chd1 chromatin remodeler
A Patel, S Chakravarthy, S Morrone, IM Nodelman, JN McKnight, ...
Nucleic Acids Research 41 (3), 1637-1648, 2013
Enzymatic excision of uracil residues in nucleosomes depends on the local DNA structure and dynamics
Y Ye, MR Stahley, J Xu, JI Friedman, Y Sun, JN McKnight, JJ Gray, ...
Biochemistry 51 (30), 6028-6038, 2012
Genome‐wide analysis of Nucleosome positions, occupancy, and accessibility in yeast: nucleosome mapping, high‐resolution histone ChIP, and NCAM
J Rodriguez, JN McKnight, T Tsukiyama
Current protocols in molecular biology 108 (1), 21.28. 1-21.28. 16, 2014
Sequence-targeted nucleosome sliding in vivo by a hybrid Chd1 chromatin remodeler
JN McKnight, T Tsukiyama, GD Bowman
Genome research 26 (5), 693-704, 2016
The conserved HDAC Rpd3 drives transcriptional quiescence in S. cerevisiae
JN McKnight, T Tsukiyama
Genomics Data 6, 245-248, 2015
Engineered chromatin remodeling proteins for precise nucleosome positioning
DA Donovan, JG Crandall, OGB Banks, ZD Jensvold, V Truong, ...
Cell reports 29 (8), 2520-2535. e4, 2019
Basis of specificity for a conserved and promiscuous chromatin remodeling protein
DA Donovan, JG Crandall, VN Truong, AL Vaaler, TB Bailey, D Dinwiddie, ...
Elife 10, e64061, 2021
Condensin-dependent chromatin condensation represses transcription globally during quiescence
SG Swygert, S Kim, X Wu, T Fu, TH Hsieh, OJ Rando, RN Eisenman, ...
bioRxiv, 320895, 2018
A molecular off switch for transcriptional quiescence
JN McKnight, LL Breeden, T Tsukiyama
Cell Cycle 14 (23), 3667-3668, 2015
Lewis Acid‐Induced N‐Methyleneamines as Initiators in the Synthesis of Secondary Amine‐Terminated Polymers
JN McKnight, ES Tillman, LR Sarry
Macromolecular rapid communications 27 (18), 1578-1583, 2006
Rapid and inexpensive preparation of genome-wide nucleosome footprints from model and non-model organisms
LE McKnight, JG Crandall, TB Bailey, OGB Banks, KN Orlandi, VN Truong, ...
STAR protocols 2 (2), 100486, 2021
Dynamic regulation of transcription factors by nucleosome remodeling
M Li, P Sen, L Olufemi, A Hada, MA Hall, BY Smith, S Forth, JN McKnight, ...
Biophysical Journal 106 (2), 76a, 2014
Bulky Histone Modifications May Have an Oversized Role in Nucleosome Dynamics
K Orlandi, J McKnight
BioEssays: news and reviews in molecular, cellular and developmental biology …, 2020
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