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Prashanth Athri
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Polycomb preferentially targets stalled promoters of coding and non-coding transcripts
D Enderle, C Beisel, MB Stadler, M Gerstung, A Prashanth, R Paro
Genome Research 21 (2), 216-226, 2011
1822011
Web-based drug repurposing tools: a survey
PA E. Sam
Briefings in Bioinformatics, 2017
562017
Combining Microarray-based Genomic Selection (MGS) with the Illumina Genome Analyzer Platform to Sequence Diploid Target Regions
DT Okou, AE Locke, KM Steinberg, K Hagen, P Athri, AC Shetty, V Patel, ...
Annals of Human Genetics 73 (5), 502-513, 2009
502009
Molecular Dynamics of Water-Mediated Interactions of a Linear Benzimidazole−Biphenyl Diamidine with the DNA Minor Groove
P Athri, WD Wilson
Journal of American Chemical Society 131 (22), 76, 2009
482009
SeqAnt: A web service to rapidly identify and annotate DNA sequence variations
AC Shetty, P Athri, K Mondal, VL Horner, KM Steinberg, V Patel, ...
BMC Bioinformatics 11 (471), 2010
472010
3D QSAR on a library of heterocyclic diamidine derivatives with antiparasitic activity
P Athri, T Wenzler, P Ruiz, R Brun, DW Boykin, R Tidwell, WD Wilson
Bioorganic & Medicinal Chemistry 14 (9), 3144-3152, 2006
472006
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources
D Sulakhe, M D’Souza, S Wang, S Balasubramanian, P Athri, B Xie, ...
Briefings in bioinformatics 20 (5), 1754-1768, 2019
292019
Pushing the Frontiers of First-Principles Based Computer Simulations of Chemical and Biological Systems
E Brunk, N Ashari, P Athri, P Campomanes, FF de Carvalho, ...
Chimia 65 (9), 667-671, 2011
272011
Assessing the performance of computational methods for the prediction of the ground state structure of a cyclic decapeptide
M Doemer, M Guglielmi, P Athri, NS Nagornova, TR Rizzo, OV Boyarkin, ...
International Journal of Quantum Chemistry 113 (6), 808-814, 2012
202012
Pharmacophore model for pentamidine analogs active against Plasmodium falciparum
P Athri, T Wenzler, R Tidwell, SM Bakunova, DW Wilson
European Journal of Medicinal Chemistry 45 (12), 6147–6151, 2010
192010
Predicting adverse drug reactions of two‐drug combinations using structural and transcriptomic drug representations to train an artificial neural network
S Shankar, I Bhandari, DT Okou, G Srinivasa, P Athri
Chemical Biology & Drug Design 97 (3), 665-673, 2021
152021
Genetic‐Algorithm‐Based Optimization of a Peptidic Scaffold for Sequestration and Hydration of CO2
E Brunk, MAS Perez, P Athri, U Rothlisberger
ChemPhysChem 17 (23), 3831-3835, 2016
82016
Chembl bot-a chat bot for chembl database
V Murali, RJ Sarma, PA Sukanya, P Athri
2018 Fourteenth International Conference on Information Processing (ICINPRO …, 2018
62018
CompoundDB4j: Integrated drug resource of heterogeneous chemical databases
V Murali, C Königs, S Deekshitula, S Nukala, MD Santhi, P Athri
Molecular informatics 39 (9), 2000013, 2020
52020
Predicting clinical trial outcomes using drug bioactivities through graph database integration and machine learning
V Murali, YP Muralidhar, C Königs, M Nair, S Madhu, P Nedungadi, ...
Chemical Biology & Drug Design 100 (2), 169-184, 2022
32022
Analysis of RNA-Seq data using self-supervised learning for vital status prediction of colorectal cancer patients
G Padegal, MK Rao, OA Boggaram Ravishankar, S Acharya, P Athri, ...
BMC bioinformatics 24 (1), 241, 2023
22023
Review of electrostatic force calculation methods and their acceleration in molecular dynamics packages using graphics processors
A George, S Mondal, M Purnaprajna, P Athri
ACS omega 7 (37), 32877-32896, 2022
22022
A Machine Learning Understanding of Sepsis
M Shetty, SM Alex, M Moni, F Edathadathil, P Prasanna, V Menon, ...
2021 43rd Annual International Conference of the IEEE Engineering in …, 2021
22021
Laplacian score and genetic algorithm based automatic feature selection for Markov State Models in adaptive sampling based molecular dynamics
A George, M Purnaprajna, P Athri
PeerJ Physical Chemistry 2, e9, 2020
12020
Application of Computer-Aided Drug Discovery Methodologies Towards the Rational Design of Drugs Against Infectious Diseases
P Athri
12008
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