| CHARMM-GUI Membrane Builder for Complex Biological Membrane Simulations with Glycolipids and Lipoglycans J Lee, DS Patel, J Ståhle, SJ Park, NR Kern, S Kim, J Lee, X Cheng, ... Journal of chemical theory and computation 15 (1), 775-786, 2018 | 393 | 2018 |
| CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates SJ Park, J Lee, Y Qi, NR Kern, HS Lee, S Jo, IS Joung, K Joo, J Lee, W Im Glycobiology 29 (4), 320-331, 2019 | 241 | 2019 |
| Developing a fully glycosylated full-length SARS-CoV-2 spike protein model in a viral membrane H Woo, SJ Park, YK Choi, T Park, M Tanveer, Y Cao, NR Kern, J Lee, ... The journal of physical chemistry B 124 (33), 7128-7137, 2020 | 231 | 2020 |
| CHARMM-GUI supports the Amber force fields J Lee, M Hitzenberger, M Rieger, NR Kern, M Zacharias, W Im The Journal of chemical physics 153 (3), 2020 | 190 | 2020 |
| CHARMM-GUI polymer builder for modeling and simulation of synthetic polymers YK Choi, SJ Park, S Park, S Kim, NR Kern, J Lee, W Im Journal of chemical theory and computation 17 (4), 2431-2443, 2021 | 74 | 2021 |
| CHARMM-GUI nanomaterial modeler for modeling and simulation of nanomaterial systems YK Choi, NR Kern, S Kim, K Kanhaiya, Y Afshar, SH Jeon, S Jo, ... Journal of chemical theory and computation 18 (1), 479-493, 2021 | 69 | 2021 |
| CHARMM-GUI free energy calculator for absolute and relative ligand solvation and binding free energy simulations S Kim, H Oshima, H Zhang, NR Kern, S Re, J Lee, B Roux, Y Sugita, ... Journal of chemical theory and computation 16 (11), 7207-7218, 2020 | 63 | 2020 |
| CHARMM-GUI PDB manipulator: Various PDB structural modifications for biomolecular modeling and simulation SJ Park, N Kern, T Brown, J Lee, W Im Journal of Molecular Biology 435 (14), 167995, 2023 | 31 | 2023 |
| Lipid-linked oligosaccharides in membranes sample conformations that facilitate binding to oligosaccharyltransferase NR Kern, HS Lee, EL Wu, S Park, K Vanommeslaeghe, AD MacKerell, ... Biophysical journal 107 (8), 1885-1895, 2014 | 28 | 2014 |
| Dynamics and interactions of GPI-linked lynx1 protein with/without nicotinic acetylcholine receptor in membrane bilayers C Dong, NR Kern, KR Anderson, XF Zhang, JM Miwa, W Im The Journal of Physical Chemistry B 124 (20), 4017-4025, 2020 | 8 | 2020 |
| CHARMM-GUI multicomponent assembler for modeling and simulation of complex heterogeneous biomolecular systems NR Kern Biophysical Journal 116 (3), 290a, 2019 | 2 | 2019 |
| CHARMM-GUI Multicomponent Assembler for Modeling and Simulation of Complex Multicomponent Systems NR Kern, J Lee, YK Choi, W Im bioRxiv, 2023 | 1 | 2023 |
| ST-analyzer: A framework for remote simulation analysis and management NR Kern, W Im Biophysical Journal 123 (3), 283a, 2024 | | 2024 |
| CHARMM-GUI multicomponent assembler for modeling and simulation of complex multicomponent systems NR Kern, J Lee, YK Choi, W Im Biophysical Journal 121 (3), 529a, 2022 | | 2022 |
| CHARMM-GUI Nanomaterial Modeler: extension to ligand-protected nanomaterials YK Choi, S Feng, NR Kern, W Im Biophysical Journal 121 (3), 273a-274a, 2022 | | 2022 |
| Modeling and Simulation of a Fully-glycosylated Full-length SARS-CoV-2 Spike Protein in a Viral Membrane (preprint) H Woo, SJ Park, YK Choi, T Park, M Tanveer, Y Cao, NR Kern, J Lee, ... | | 2020 |
| CHARMM-GUI Lecture Series on Molecular Modeling and Simulation NR Kern, J Lee, M Fine-Morris, JB Klauda, K Kuczera, P Fleming, W Im Biophysical Journal 114 (3), 184a, 2018 | | 2018 |
| Molecular Dynamics Simulations of Lipid-Linked Oligosaccharides in Lipid Bilayers NR Kern, EL Wu, S Jo, K Vanommeslaeghe, W Im Biophysical Journal 106 (2), 703a, 2014 | | 2014 |
| Molecular Dynamics Simulations of Lipid-Linked Oligosaccharide in Membrane Bilayers N Kern, EL Wu, S Jo, K Vanommeslaeghe, W Im Biophysical Journal 104 (2), 83a, 2013 | | 2013 |
| Supporting Materials CHARMM-GUI Membrane Builder for Complex Biological Membrane Simulations with Glycolipids and Lipoglycans J Lee, DS Patel, J Ståhle, SJ Park, NR Kern, S Kim, J Lee, X Cheng, ... | | |
