The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin A Zemach*, MY Kim*, PH Hsieh*, D Coleman-Derr, L Eshed-Williams, ... Cell 153 (1), 193-205, 2013 | 1023 | 2013 |
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues PH Hsieh*, S He*, T Buttress, H Gao, M Couchman, RL Fischer, ... Proceedings of the National Academy of Sciences 113 (52), 15132-15137, 2016 | 80 | 2016 |
FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis JM Frost, MY Kim, GT Park, PH Hsieh, M Nakamura, SJH Lin, H Yoo, ... Proceedings of the National Academy of Sciences 115 (20), E4720-E4729, 2018 | 58 | 2018 |
A genetic toolbox for metabolic engineering of Issatchenkia orientalis M Cao, Z Fatma, X Song, PH Hsieh, VG Tran, WL Lyon, M Sayadi, Z Shao, ... Metabolic engineering 59, 87-97, 2020 | 32 | 2020 |
Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting JA Rodrigues*, PH Hsieh*, D Ruan, T Nishimura, MK Sharma, R Sharma, ... Proceedings of the National Academy of Sciences 118 (29), 2021 | 13 | 2021 |
Comparative genomics of grass EST libraries reveals previously uncharacterized splicing events in crop plants TJ Chuang, MY Yang, CC Lin, PH Hsieh, LY Hung BMC plant biology 15, 1-15, 2015 | 8 | 2015 |
Metabolic engineering of low-pH-tolerant non-model yeast, Issatchenkia orientalis, for production of citramalate ZY Wu, W Sun, Y Shen, J Pratas, PF Suthers, PH Hsieh, S Dwaraknath, ... Metabolic Engineering Communications 16, e00220, 2023 | 2 | 2023 |
Distinct regulatory pathways contribute to dynamic CHH methylation patterns in transposable elements throughout Arabidopsis embryogenesis J Lee, S Lee, K Park, SY Shin, JM Frost, PH Hsieh, C Shin, RL Fischer, ... Frontiers in Plant Science 14, 1204279, 2023 | 1 | 2023 |
Embryo-specific epigenetic mechanisms reconstitute the CHH methylation landscape during Arabidopsis embryogenesis PH Hsieh, JM Frost, Y Choi, TF Hsieh, D Zilberman, RL Fischer bioRxiv, 2023.04. 06.535361, 2023 | 1 | 2023 |
Maintenance and inheritance of DNA methylation in Arabidopsis PH Hsieh UC Berkeley, 2016 | 1 | 2016 |
A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains V Dubinkina, S Bhogale, PH Hsieh, P Dibaeinia, A Nambiar, S Maslov, ... Microbiology Spectrum, e02536-23, 2023 | | 2023 |
H2A.X promotes endosperm-specific DNA methylation in Arabidopsis thaliana JM Frost, J Lee, PH Hsieh, SJH Lin, Y Min, M Bauer, AM Runkel, HT Cho, ... BMC Plant Biology 23 (1), 585, 2023 | | 2023 |
H2A.X mutants exhibit enhanced DNA demethylation in Arabidopsis thaliana JM Frost, J Lee, PH Hsieh, SJH Lin, Y Min, M Bauer, AM Runkel, HT Cho, ... bioRxiv, 2023.01. 08.523178, 2023 | | 2023 |
Population phenomics of Issathenkia orientalis for creation of a safer and more robust chassis for next-generation industrial biotechnology Y Sasaki, PH Hsieh, Z Fatma, H Zhao | | |
Leveraging Comparative Population Genomics to Dissect the Mechanisms of Issatchenkia orientalis Fluconazole Resistance PH Hsieh, Y Yoshikuni | | |