|The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication|
M Wang, Y Yu, G Haberer, PR Marri, C Fan, JL Goicoechea, A Zuccolo, ...
Nature genetics 46 (9), 982, 2014
|Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport|
J Qi, Q Qian, Q Bu, S Li, Q Chen, J Sun, W Liang, Y Zhou, C Chu, X Li, ...
Plant physiology 147 (4), 1947-1959, 2008
|Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution|
J Chen, Q Huang, D Gao, J Wang, Y Lang, T Liu, B Li, Z Bai, ...
Nature communications 4, 1595, 2013
|Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation|
F Li, W Liu, J Tang, J Chen, H Tong, B Hu, C Li, J Fang, M Chen, C Chu
Cell research 20 (7), 838, 2010
|Dynamic evolution of Oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set|
JSS Ammiraju, F Lu, A Sanyal, Y Yu, X Song, N Jiang, AC Pontaroli, ...
The Plant Cell 20 (12), 3191-3209, 2008
|Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes|
F Lu, JSS Ammiraju, A Sanyal, S Zhang, R Song, J Chen, G Li, Y Sui, ...
Proceedings of the National Academy of Sciences 106 (6), 2071-2076, 2009
|BAK1 is not a target of the Pseudomonas syringae effector AvrPto|
T Xiang, N Zong, J Zhang, J Chen, M Chen, JM Zhou
Molecular plant-microbe interactions 24 (1), 100-107, 2011
|A snapshot of the emerging tomato genome sequence|
LA Mueller, RK Lankhorst, SD Tanksley, JJ Giovannoni, R White, ...
The Plant Genome 2 (1), 78-92, 2009
|Population genetics of foxtail millet and its wild ancestor|
C Wang, J Chen, H Zhi, L Yang, W Li, Y Wang, H Li, B Zhao, M Chen, ...
BMC genetics 11 (1), 90, 2010
|Assessing genome assembly quality using the LTR Assembly Index (LAI)|
S Ou, J Chen, N Jiang
Nucleic acids research 46 (21), e126-e126, 2018
|A highly conserved, small LTR retrotransposon that preferentially targets genes in grass genomes|
D Gao, J Chen, M Chen, BC Meyers, S Jackson
PloS one 7 (2), e32010, 2012
|Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum|
A Sanyal, JSS Ammiraju, F Lu, Y Yu, T Rambo, J Currie, K Kollura, ...
Molecular biology and evolution 27 (11), 2487-2506, 2010
|The impact and origin of copy number variations in the Oryza species|
Z Bai, J Chen, Y Liao, M Wang, R Liu, S Ge, RA Wing, M Chen
BMC genomics 17 (1), 261, 2016
|Tracking the genome-wide outcomes of a transposable element burst over decades of amplification|
L Lu, J Chen, SMC Robb, Y Okumoto, JE Stajich, SR Wessler
Proceedings of the National Academy of Sciences 114 (49), E10550-E10559, 2017
|PRAPI: post-transcriptional regulation analysis pipeline for Iso-Seq|
Y Gao, H Wang, H Zhang, Y Wang, J Chen, L Gu
Bioinformatics 34 (9), 1580-1582, 2018
|RelocaTE2: a high resolution transposable element insertion site mapping tool for population resequencing|
J Chen, TR Wrightsman, SR Wessler, JE Stajich
PeerJ 5, e2942, 2017
|Comparative sequence analysis of the Ghd7 orthologous regions revealed movement of Ghd7 in the grass genomes|
L Yang, T Liu, B Li, Y Sui, J Chen, J Shi, RA Wing, M Chen
PloS one 7 (11), e50236, 2012
|Significant positive correlation between the recombination rate and GC content in the human pseudoautosomal region|
JF Chen, F Lu, SS Chen, SH Tao
Genome 49 (5), 413-419, 2006
|Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice|
J Chen, L Lu, J Benjamin, S Diaz, CN Hancock, JE Stajich, SR Wessler
Nature communications 10 (1), 641, 2019
|Exploiting collateral sensitivity controls growth of mixed culture of sensitive and resistant cells and decreases selection for resistant cells|
VK Grolmusz, J Chen, R Emond, PA Cosgrove, L Pflieger, A Nath, ...