Peter W. Rose
Cited by
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RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy
SK Burley, HM Berman, C Bhikadiya, C Bi, L Chen, L Di Costanzo, ...
Nucleic acids research 47 (D1), D464-D474, 2019
The RCSB protein data bank: integrative view of protein, gene and 3D structural information
PW Rose, A Prlić, A Altunkaya, C Bi, AR Bradley, CH Christie, ...
Nucleic acids research, gkw1000, 2016
The RCSB Protein Data Bank: redesigned web site and web services
PW Rose, B Beran, C Bi, WF Bluhm, D Dimitropoulos, DS Goodsell, ...
Nucleic acids research 39 (suppl_1), D392-D401, 2010
Recon3D enables a three-dimensional view of gene variation in human metabolism
E Brunk, S Sahoo, DC Zielinski, A Altunkaya, A Dräger, N Mih, F Gatto, ...
Nature biotechnology 36 (3), 272-281, 2018
NGL viewer: web-based molecular graphics for large complexes.
RPW Rose AS, Bradley AR, Valasatava Y, Duarte JM, Prlic A
Bioinformatics. 34 (21), 3755-3758, 2018
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education
PW Rose, A Prlić, C Bi, WF Bluhm, CH Christie, S Dutta, RK Green, ...
Nucl. Acids Res., gku1214, 2014
The RCSB Protein Data Bank: new resources for research and education
PW Rose, C Bi, WF Bluhm, CH Christie, D Dimitropoulos, S Dutta, ...
Nucleic acids research 41 (D1), D475-D482, 2012
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
Deciphering common failures in molecular docking of ligand-protein complexes
GM Verkhivker, D Bouzida, DK Gehlhaar, PA Rejto, S Arthurs, AB Colson, ...
Journal of computer-aided molecular design 14, 731-751, 2000
Pre-calculated protein structure alignments at the RCSB PDB website
A Prlić, S Bliven, PW Rose, WF Bluhm, C Bizon, A Godzik, PE Bourne
Bioinformatics 26 (23), 2983-2985, 2010
BioJava: an open-source framework for bioinformatics in 2012
A Prlić, A Yates, SE Bliven, PW Rose, J Jacobsen, PV Troshin, ...
Bioinformatics, 2012
Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks
A Rule, A Birmingham, C Zuniga, I Altintas, SC Huang, R Knight, ...
PLoS computational biology 15 (7), e1007007, 2019
Complexity and simplicity of ligand–macromolecule interactions: the energy landscape perspective
GM Verkhivker, D Bouzida, DK Gehlhaar, PA Rejto, ST Freer, PW Rose
Current opinion in structural biology 12 (2), 197-203, 2002
Simulating disorder–order transitions in molecular recognition of unstructured proteins: where folding meets binding
GM Verkhivker, D Bouzida, DK Gehlhaar, PA Rejto, ST Freer, PW Rose
Proceedings of the National Academy of Sciences 100 (9), 5148-5153, 2003
Structure-based design, synthesis, and biological evaluation of irreversible human rhinovirus 3C protease inhibitors. 8. Pharmacological optimization of orally bioavailable 2 …
PS Dragovich, TJ Prins, R Zhou, TO Johnson, Y Hua, HT Luu, SK Sakata, ...
Journal of medicinal chemistry 46 (21), 4572-4585, 2003
Impact of genetic variation on three dimensional structure and function of proteins
R Bhattacharya, PW Rose, SK Burley, A Prlić
PloS one 12 (3), e0171355, 2017
Trendspotting in the protein data bank
HM Berman, BC Narayanan, L Di Costanzo, S Dutta, S Ghosh, ...
FEBS letters 587 (8), 1036-1045, 2013
A collection of computer methods for synthesis design and reaction prediction
J Gasteiger, WD Ihlenfeldt, P Röse
Recueil des Travaux Chimiques des Pays‐Bas 111 (6), 270-290, 1992
Computer simulations of ligand–protein binding with ensembles of protein conformations: A Monte Carlo study of HIV‐1 protease binding energy landscapes
D Bouzida, PA Rejto, S Arthurs, AB Colson, ST Freer, DK Gehlhaar, ...
International journal of quantum chemistry 72 (1), 73-84, 1999
Automated derivation of reaction rules for the EROS 6.0 system for reaction prediction
P Röse, J Gasteiger
Analytica chimica acta 235, 163-168, 1990
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