Urminder Singh
Cited by
Cited by
PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea
U Singh, N Khemka, MS Rajkumar, R Garg, M Jain
Nucleic acids research 45 (22), e183-e183, 2017
Genome-Wide Transcript Profiling Reveals an Auxin-Responsive Transcription Factor, OsAP2/ERF-40, Promoting Rice Adventitious Root Development
A Neogy, T Garg, A Kumar, AK Dwivedi, H Singh, U Singh, Z Singh, ...
Plant and Cell Physiology 60 (10), 2343-2355, 2019
Maximizing prediction of orphan genes in assembled genomes
A Seetharam, U Singh, J Li, P Bhandary, Z Arendsee, ES Wurtele
bioRxiv, 2019
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
U Singh, M Hur, K Dorman, ES Wurtele
Nucleic acids research 48 (4), e23-e23, 2020
phylostratr: a framework for phylostratigraphy
Z Arendsee, J Li, U Singh, A Seetharam, K Dorman, ES Wurtele
Bioinformatics 35 (19), 3617-3627, 2019
Genetic novelty: how new genes are born
U Singh, ES Wurtele
Elife 9, e55136, 2020
Fagin: synteny-based phylostratigraphy and finer classification of young genes
Z Arendsee, J Li, U Singh, P Bhandary, A Seetharam, ES Wurtele
BMC bioinformatics 20 (1), 1-14, 2019
Ensemble of deep long short term memory networks for labelling origin of replication sequences
U Singh, S Chauhan, A Krishnamachari, L Vig
2015 IEEE International Conference on Data Science and Advanced Analytics …, 2015
Recycling RNA-seq data to identify candidate orphan genes for experimental analysis
J Li, Z Arendsee, U Singh, ES Wurtele
BioRxiv, 671263, 2019
Systemic tissue and cellular disruption from SARS-CoV-2 infection revealed in COVID-19 autopsies and spatial omics tissue maps
J Park, J Foox, T Hether, A Beheshti, A Saravia-Butler, U Singh, ...
bioRxiv, 2021
orfipy: a fast and flexible tool for extracting ORFs
U Singh, ES Wurtele
bioRxiv, 2020
Differential expression of COVID-19-related genes in European Americans and African Americans
U Singh, ES Wurtele
bioRxiv, 2020
Synder: inferring genomic orthologs from synteny maps
Z Arendsee, A Wilkey, U Singh, J Li, M Hur, ES Wurtele
bioRxiv, 554501, 2019
pyrpipe: a Python package for RNA-Seq workflows
U Singh, J Li, A Seetharam, ES Wurtele
NAR genomics and bioinformatics 3 (2), lqab049, 2021
African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors associated with immunologic functions and environmental exposures
U Singh, KM Hernandez, BJ Aronow, ES Wurtele
Scientific reports 11 (1), 1-14, 2021
Antimicrobial resistance research in a post-pandemic world: Insights on antimicrobial resistance research in the COVID-19 pandemic
U Singh, KM Hernandez, BJ Aronow, ES Wurtele
Nature Research, 2021
Foster thy young: Enhanced prediction of orphan genes in assembled genomes
J Li, U Singh, P Bhandary, J Campbell, Z Arendsee, AS Seetharam, ...
bioRxiv, 2019.12. 17.880294, 2021
The Great Deceiver: miR-2392's Hidden Role in Driving SARS-CoV-2 Infection
JT McDonald, FJ Enguita, D Taylor, RJ Griffin, W Priebe, MR Emmett, ...
bioRxiv, 2021
Targets of Opportunity: The Birth of Orphan Genes, Exemplified in Yeast, Arabidopsis, Maize and Humans
ES Wurtele, U Singh, P Bhandary, J Li, AS Seetharam
Plant and Animal Genome XXVIII Conference (January 11-15, 2020), 2020
How new genes are born
S Urminder, SW Eve
eLife 9, 2020
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